CK932601

Overview
NameCK932601
Unique NameCK932601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932601_ssr119 microsatellite CK932601_ssr119:119..128. BLAST: Citrus ESTs to TAIR9
CK932601_ssr244 microsatellite CK932601_ssr244:244..253. BLAST: Citrus ESTs to TAIR9
Homology
BLAST of CK932601 vs. ExPASy Swiss-Prot
Match: YMF16_ARATH (Uncharacterized tatC-like protein ymf16 OS=Arabidopsis thaliana GN=YMF16 PE=2 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 9.490e-70
Identity = 131/175 (74.86%), Postives = 134/175 (76.57%), Query Frame = 1
Query:  244 IYIFYELYFALETLLGEVRIRSVWILIGLGLTWFTCYWFSEEXXXXXXXXXXXXXXDSYFVCTQLTEALSTYVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRAKYNRXXXXXXXXXXXXXXXXXSWVVPNVWHFLYFVGATSTNLLMIKLQPKIYDYIMLTARILFISSVCS 768
            +YI YE  FALET+LGEVRIRSV ILIGLGLTWFTCYWFSEE              D YFVCTQLTEA ST+VATSSIACSYFVFPLISYQIWCFLIPSCYGEQR KYNR                 SWVVPNVWHFLYFVGATSTN LMIKLQPKIYDYIMLT RI FISSVCS
Sbjct:    4 LYISYEFNFALETILGEVRIRSVRILIGLGLTWFTCYWFSEELIFLLALPFLTLPFDLYFVCTQLTEAFSTFVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRTKYNRFFYLSGFCFFLFLFLTLSWVVPNVWHFLYFVGATSTNSLMIKLQPKIYDYIMLTVRISFISSVCS 178          
BLAST of CK932601 vs. ExPASy Swiss-Prot
Match: YMF16_MARPO (Uncharacterized tatC-like protein ymf16 OS=Marchantia polymorpha GN=YMF16 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.277e-54
Identity = 103/168 (61.31%), Postives = 116/168 (69.05%), Query Frame = 1
Query:  268 FALETLLGEVRIRSVWILIGLGLTWFTCYWFSEEXXXXXXXXXXXXXX-DSYFVCTQLTEALSTYVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRAKYNRXXXXXXXXXXXXXXXXXSWVVPNVWHFLYFVGATSTNLLMIKLQPKIYDYIMLTARILFISSVCS 768
            F L+T+L EVRIR  WILI    TWFTCYWFSEE               DS F+CTQLTEALSTYV TS I+C YF+FP +SYQIWCFL+PSCY EQR KYN+                  W+VPNVWHFLY +  TSTNLL+IKLQPKI+DYIMLT RILFISS+CS
Sbjct:    3 FVLKTILEEVRIRVFWILICFSFTWFTCYWFSEEFIFLLAKPFLTLPYLDSSFICTQLTEALSTYVTTSLISCFYFLFPFLSYQIWCFLMPSCYEEQRKKYNKLFYLSGFCFFLFFFVTFVWIVPNVWHFLYKLSTTSTNLLIIKLQPKIFDYIMLTVRILFISSICS 170          
BLAST of CK932601 vs. ExPASy Swiss-Prot
Match: YMF16_RECAM (Uncharacterized tatC-like protein ymf16 OS=Reclinomonas americana GN=YMF16 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.540e-11
Identity = 46/163 (28.22%), Postives = 72/163 (44.17%), Query Frame = 1
Query:  280 TLLGEVRIRSVWILIGLGLTWFTCYWFSEEXXXXXXXXXXXXXXDSYFVCTQLTEALSTYVATSSIACSYFVFPLISYQIWCFLIPSCYGEQRAKYNRXXXXXXXXXXXXXXXXXSWVVPNVW-HFLYFVGATSTNLLMIKLQPKIYDYIMLTARILFISSVC 765
            T L E+R+R +++L  + LT F  Y + EE                 F+ T L EA  TY+  S I   Y  +P+  YQIW FLIP  +  ++  +                     + P  +  FL F       L  I+LQ KI++Y++L  +++F  S+C
Sbjct:    9 THLYEIRLRIIYLLYSIFLTCFCSYQYKEEIFYLLFIPL-----SKNFIYTDLIEAFITYIKLSIIVGIYLSYPIFLYQIWSFLIPGFFLYEKKLFRLLCLTSIFLYFLGSCIGYYLLFPIAFTFFLGFQKLGKDQLFTIELQAKIHEYLILNTKLIFSLSIC 166          
The following BLAST results are available for this feature:
BLAST of CK932601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YMF16_ARATH9.490e-7074.86Uncharacterized tatC-like protein ymf16 OS=Arabido... [more]
YMF16_MARPO3.277e-5461.31Uncharacterized tatC-like protein ymf16 OS=Marchan... [more]
YMF16_RECAM1.540e-1128.22Uncharacterized tatC-like protein ymf16 OS=Reclino... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004531_G05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932601 ID=CK932601; Name=CK932601; organism=Citrus sinensis; type=EST; length=775bp
GGGCACAACNNNCTCAAAAAAAGTGAAAGAAAAATGATAGGATGTGCTCC
GAAGGCCAGAGTTCGCAGAGTCGGGTAGTTCCGCTCATTTATTTCCGTTC
GAGATCCATCGTCCTCGGGAGAGAGAGAAAGTAATCGGCAGGGAGGCATT
ACTCCCACCCGGAAAACGTGCAACCAACCTTTCCTCTCCTGCGCGGGCTC
GGGGCTTCTAATCAAATATTTCTATTTTTCCTTTGAATTACTCATATATA
TATTCTATGAACTTTATTTCGCATTGGAAACTCTTCTAGGAGAAGTTCGA
ATCCGTTCCGTTTGGATATTGATTGGTCTTGGTTTGACATGGTTTACGTG
TTACTGGTTCTCGGAAGAGTTAATATTTCTATTAACTAAACCCTTTCTTA
CCCTGCCTTTGGACTCGTATTTTGTTTGTACACAATTAACGGAGGCCCTC
TCGACATATGTTGCAACGTCTTCAATAGCATGCTCTTACTTCGTCTTTCC
TTTAATAAGTTATCAAATTTGGTGCTTTTTGATCCCTAGTTGCTATGGGG
AACAAAGGGCGAAATACAATCGATTCTTCTATTTAAGTGGTTTTTGCTTT
TTCTTCTTCCTGTTCCTAACTTTTTCCTGGGTAGTTCCCAATGTTTGGCA
CTTTCTATACTTCGTGGGTGCAACATCAACAAATTTGCTCATGATCAAGT
TACAACCTAAGATCTATGACTATATTATGTTAACTGCTCGTATTTTGTTC
ATTTCATCGGTATGCTCTCNNNTAC
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