CK933920

Overview
NameCK933920
Unique NameCK933920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11772 contig Csv1_Contig11772:27..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933920 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 3
Query:   42 KVAIVTASTQGIGFGIAERLGLEGAXXXXXXXXXXNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEV 263
            KVA+VTAST GIG  IA RL  +GA          NVD AV  L+  G+ V GVVCHV   + R+ L+N  +++
Sbjct:   15 KVALVTASTDGIGLAIARRLAEDGAHVVISSRKQQNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKL 88          
BLAST of CK933920 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 3
Query:   42 KVAIVTASTQGIGFGIAERLGLEGAXXXXXXXXXXNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEVRNLVVPFLLSH 296
            KVA+VTAST GIGF IA RL  +GA          NVD AV  L+  G+ V G+VCHV   + R+ LI   ++ R+  +  L+S+
Sbjct:   15 KVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALK-RHRGIDILVSN 98          
BLAST of CK933920 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 3
Query:   42 KVAIVTASTQGIGFGIAERLGLEGAXXXXXXXXXXNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEV 263
            KVA+VTAST GIGF IA RL  +GA          NVD AV  LK  G+ V G VCHV   + R+ L+   +++
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKL 88          
BLAST of CK933920 vs. ExPASy Swiss-Prot
Match: DHRS2_HUMAN (Dehydrogenase/reductase SDR family member 2 OS=Homo sapiens GN=DHRS2 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 32/73 (43.84%), Postives = 44/73 (60.27%), Query Frame = 3
Query:   42 KVAIVTASTQGIGFGIAERLGLEGAXXXXXXXXXXNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIE 260
            +VA+VT ST GIGF IA RL  +GA          NVD A+ KL+  G+ V G+VCHV   + R+ L+ + +E
Sbjct:   15 RVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQLVAKALE 87          
BLAST of CK933920 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 3
Query:   42 KVAIVTASTQGIGFGIAERLGLEGAXXXXXXXXXXNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEV 263
            KVA+VTAST GIGF IA RL  +GA          NVD+AV  L+  G+ V G VCHV   + R+ L+   +++
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKL 88          
BLAST of CK933920 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 3
Query:   42 KVAIVTASTQGIGFGIAERLGLEGAXXXXXXXXXXNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEV 263
            KVA+VTAST GIGF IA RL  +GA          NVD+AV  L+  G+ V G VCHV   + R+ L+   +++
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKL 88          
The following BLAST results are available for this feature:
BLAST of CK933920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
DHRS4_RAT2.453e-1145.95Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
DHRS4_MOUSE3.204e-1143.53Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
DHRS4_BOVIN3.204e-1145.95Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHRS2_HUMAN3.204e-1143.84Dehydrogenase/reductase SDR family member 2 OS=Hom... [more]
DHRS4_PONAB5.465e-1144.59Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN5.465e-1144.59Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004543_G01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933920 ID=CK933920; Name=CK933920; organism=Citrus sinensis; type=EST; length=744bp
GGGGAATGGAGAAGACGTTTATGGCAAANNNNNTCCAAGGGAAGGTGGCG
ATCGTAACGGCTTCGACTCAGGGCATTGGCTTCGGCATCGCTGAACGGCT
CGGCTTGGAAGGCGCCTCCGTGGTTGTCTCTTCACGAAAGAAGAAAAATG
TGGATGAAGCAGTTGTCAAACTCAAAGCTCGAGGAATCGAAGTTATTGGA
GTTGTTTGTCATGTGTCAAATGGACAACAGAGAAAGAATCTCATAAACCA
AACTATTGAGGTGAGGAATTTAGTTGTACCTTTTTTATTATCACACAAAC
TACCTGATTAAATGGAAAATTAAAATTAAAAAATGATCAGTAGTTGAAAG
AAATTTTGTCAACTATAGTTAACAGCGCTCTGTTGATTTTGGTGAACTAT
TGTTTGTTTCTATCTCAACAATCGTGGATTTGTTTCAGTAATCCCATCCC
AAAGAAACACTAGATATGTGGAATTTGAGTTATTTTCCCAATTTCGGTTT
CATGTTGTTTTGCTGAGTGGTCTGTTTCAGAAATTTGGAAAAATAGATGT
GGTTGTTTCAAATGCTGCTGCCAATCCCTCTGTTGATTCCATCCTGCAAA
CCAAAGAATCAGTTCTCGACAAGTTATGGGATATCAATGTTAAATCCAGT
ATACTTCTTCTACAGGTAATTGCTTTCTCTTAAGATTCCTGCAGGAAACA
CAAAATGAAATGTTGCCATAGCATGGACACTGCATTGTAGATAC
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