CK933938

Overview
NameCK933938
Unique NameCK933938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10164 contig Csv1_Contig10164:21..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933938 vs. ExPASy Swiss-Prot
Match: TGD1_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic OS=Arabidopsis thaliana GN=TGD1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  401 PARHTRLFAIPNTDDGHPSVSMMEENKIT-NHAPGSEAESFLSKWSPPQYLWRGLSVPVLAGQVIIR 598
            P R  RL+   N +DGHPS+SM+EE   T N+AP  EAE   SKWSP +Y+WRGLSVP++AGQV++R
Sbjct:   49 PIRQRRLYVNLNANDGHPSMSMLEEETSTENNAPSQEAELPFSKWSPSKYIWRGLSVPIIAGQVVLR 115          
The following BLAST results are available for this feature:
BLAST of CK933938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TGD1_ARATH5.364e-1658.21Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004543_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933938 ID=CK933938; Name=CK933938; organism=Citrus sinensis; type=EST; length=626bp
GGGGATCCCATTCCCTACTTACGCCACAACAACCACTTCACTTTCACTGA
GTTCGCCGTCGCCGATCACCCATCTCGCCCTGTCTTTCTCTCACTTTCTT
GGAGGGTAAAGTAAATCAATGAATGAAATTTAAGAGTTACATTTGGTCCG
TAGCTGCTGTGTTGCAACCGCCATTACAATTGGCGTGTAATTGGATGTCT
GCTGTTACTCTTTCAGTTAGAGCAACGCCTTCACCGTAACTTAAGTTGAA
AATATGCAGACCATTTCACATATTCATTCTATCTCTCACTTCTTGAACAG
AAGGAGCTGTTTAAAACCCAATGGATTTGTCAAAACGAAAATCTCTAGTT
CAAGTTCATTTAGCTTCACTGCTAGAGTTCCTACTTGTAAATTTCTAGTT
CCTGCTCGACATACCAGATTGTTTGCGATACCCAACACAGATGACGGCCA
CCCATCTGTCTCCATGATGGAAGAAAACAAAATTACAAACCATGCACCCG
GTTCTGAAGCAGAGTCCTTTTTGAGCAAATGGTCGCCTCCTCAGTACCTT
TGGAGGGGATTATCAGTTCCTGTCTTGGCTGGTCAAGTAATTATTAGGAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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