CK933948

Overview
NameCK933948
Unique NameCK933948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933948_ssr640 microsatellite CK933948_ssr640:640..649. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: SYP22_ARATH (Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.456e-82
Identity = 167/257 (64.98%), Postives = 191/257 (74.32%), Query Frame = 2
Query:   86 MSFQDLEAGRPVSSLRRNLVNGKQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSFDCLL 856
            MSFQDLE+GR  S+ + N   G+QDSTQAVASGIFQINT VSTFQRLVNTLGTPKDTPELREK+HKTRLHIGQLVKDTSAKLK+ASETDH + V+             FQAVLKEFQKAQ+ AAERET YTPFVPQ+ LPSSYTA E+    D+  EQ A L ES+RQE+VLLD                          VNE+FKDLAVLV++QG +IDDIG+HI+NS+ AT+QGKSQLV+AAKTQ+SNSS  CLL
Sbjct:    1 MSFQDLESGRGRSTRKFN--GGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQTAAERETTYTPFVPQSALPSSYTAGEV----DKVPEQRAQLQESKRQELVLLDNEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQLVQAAKTQKSNSSLTCLL 251          
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: SYP23_ARATH (Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.967e-74
Identity = 152/245 (62.04%), Postives = 175/245 (71.43%), Query Frame = 2
Query:   86 MSFQDLEAGRPVSSLRRNLVNG---KQDSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 811
            MSFQDLEAGR  S      +NG   +QD+TQ VASGIFQINT+VSTF RLVNTLGTPKDTPELREK+HKTRL+IGQLVKDTSAKLK+ASETDH   V+             FQAVLKEFQKAQRLAAERET Y P V +  LPSSYT+ E+D++ D+  EQ ALLVES+RQE+VLLD                          V+E+FKDLAVLVH+QG +IDDIG+HI+NS  ATAQGKS LV+
Sbjct:    1 MSFQDLEAGRGRSLASSRNINGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKEFQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVLLDNEIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATAQGKSHLVR 245          
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: SYP21_ARATH (Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.555e-61
Identity = 138/264 (52.27%), Postives = 169/264 (64.02%), Query Frame = 2
Query:   86 MSFQDLEAGRPVSSLRRNLVNGKQ-------DSTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSFDCLL 856
            MSFQDLEAG    +  R    G+Q       D +Q VA+GIF+I+TAV++F RLVN++GTPKDT ELR+K+ KTRL I +LVK+TSAKLK+ASE D H   S             FQ+VLKEFQKAQRLAAERE  YTP V + + P+SY A ELD  S R ++Q ALL++SRRQEVV LD                          VN +FKDLA++V+ QG I+DDI S+++NS  AT Q   QL KAAKTQRSNSS  CLL
Sbjct:    1 MSFQDLEAGTRSPAPNR-FTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLKEFQKAQRLAAEREITYTPVVTKEI-PTSYNAPELDTESLRISQQQALLLQSRRQEVVFLDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAATTQATVQLRKAAKTQRSNSSLTCLL 262          
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.628e-36
Identity = 96/195 (49.23%), Postives = 115/195 (58.97%), Query Frame = 2
Query:  278 HKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSS--FDCLL 856
            HK  L IGQLVKDTSA L++ASETDH   V+             F+A LKEFQKAQ +  ERET+Y PF P+     S+++ E+DI  DRS EQ  +L+ESRRQE+VLLD                          V E+FKDLAV+V  QGT IDDI   I+N + A AQGKS LVKA+ TQ SNSS  F C L
Sbjct:  154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITVERETSYIPFDPK----GSFSSSEVDIGYDRSQEQR-VLMESRRQEIVLLDNEISLNEARIEAREQGIQEVKHQISEVMEMFKDLAVMVDHQGT-IDDIDEKIDNLRSAAAQGKSHLVKASNTQGSNSSLLFSCSL 342          
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: STX7_PONAB (Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.789e-20
Identity = 66/232 (28.45%), Postives = 105/232 (45.26%), Query Frame = 2
Query:  167 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLL--DXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSFDCLL 856
            Q ++S I +I    +  QR +N LGTP+D+PELR+++ + + +  QL K+T   +K+                        F   L  FQK QR AAERE  +   V  +   S           D S E++ +  ES+ Q  V +  +                          +NE+FKDL +++HEQG +ID I +++EN++V   Q   QL +AA  QR +    C++
Sbjct:   16 QRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLTKETDKYIKEFGSLPTTPSEQRQRKIQKDRLVGEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSG------SFPEDSSKERNLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLCII 241          
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: STX7_RAT (Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4)

HSP 1 Score: 98.2117 bits (243), Expect = 6.214e-20
Identity = 66/232 (28.45%), Postives = 105/232 (45.26%), Query Frame = 2
Query:  167 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLL--DXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSFDCLL 856
            Q ++S I +I    +  QR +N LGTP+DTPELR+++ + + +  QL K+T   +K+                        F   L  FQK QR AAERE  +   V  +   S           D S E++ +  ES+ Q  V +  +                          +NE+FKDL +++HEQG +ID I +++E+++V   Q   QL +AA  QR +    C++
Sbjct:   16 QRISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKYIKEFGFLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKEFVARVRASSRVSG------GFPEDSSKEKNFVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAANYQRKSRKTLCII 241          
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: STX7_HUMAN (Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4)

HSP 1 Score: 98.2117 bits (243), Expect = 6.214e-20
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 2
Query:  167 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLL--DXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSFDCLL 856
            Q ++S I +I       QR +N LGTP+D+PELR+++ + + +  QL K+T   +K+                        F   L  FQK QR AAERE  +   V  +   S           D S E++ +  ES+ Q  V +  +                          +NE+FKDL +++HEQG +ID I +++EN++V   Q   QL +AA  QR +    C++
Sbjct:   16 QRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSG------SFPEDSSKERNLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRKTLCII 241          
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: STX7_MOUSE (Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 4.028e-19
Identity = 66/232 (28.45%), Postives = 104/232 (44.83%), Query Frame = 2
Query:  167 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELDISSDRSAEQHALLVESRRQEVVLL--DXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSFDCLL 856
            Q ++S I +I       QR +N LGTP+D+PELR+ + + + +  QL K+T   +K+                        F   L  FQKAQR AAERE  +   V  +   S           D S E++ +  ES+ Q  V +  +                          +NE+FKDL +++HEQG +ID I +++E+++V   Q   QL +AA  QR +    C++
Sbjct:   16 QRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQLLQQKQQYTNQLAKETDKYIKEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKEFVARVRASSRVSG------GFPEDSSKEKNLVSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDMIDSIEANVESAEVHVQQANQQLSRAADYQRKSRKTLCII 241          
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: STX7A_DICDI (Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 65/266 (24.44%), Postives = 112/266 (42.11%), Query Frame = 2
Query:  122 SSLRRNLVNGKQDST-----QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXXFQAVLKEFQKAQRLAAERE-TAYTPFVPQAVLPSSYTAHELDISSD-----------------RSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSFDC 850
            +S   N   G  D T     Q+    I QI  AV    +LV  LGTPKD+ + REKI         L+   S K+K  +     ++ S             F   L++F+   ++A ++E T   P  P    P+++  +    +++                 R  E  +L+  SRRQ++  ++                          +NE+F DL+ LV EQG +I+ I + +E++ + T +G + L +A+K Q+S+ +  C
Sbjct:   69 NSFDNNGYGGDDDVTNNSDYQSTTRNIQQIQNAVQILTKLVQLLGTPKDSMDTREKIRNCVDSTTHLISSESGKVKNLTSLASRSRDSKNKLLYQKLVKE-FNNCLQQFKDIAQVATKKEKTTPLPVAPDHQQPTTFGRNNNSNNNNQNNHFLNNQQPYYDDDNREDEHQSLMESSRRQQLAQIEAEREYQNSIIQERDEGIRKIEQSIVEINEIFVDLSGLVAEQGVMINTIEASLESTTINTKEGVNHLREASKNQKSSRNKMC 333          
BLAST of CK933948 vs. ExPASy Swiss-Prot
Match: STX12_HUMAN (Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.609e-13
Identity = 60/237 (25.32%), Postives = 106/237 (44.73%), Query Frame = 2
Query:  167 QAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKIHKTRLHIGQLVKDTSAKLKQASETDHHAQVSXXXXXXXXXXXXX--FQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAHELD-----ISSDRSAEQHALLVESRRQEVVLLDXXXXXXXXXXXXXXXXXXXXXXXXXXVNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSFDCLL 856
            Q  +  I +I+ A +  + L++ LGT +D+ +L+E + + +    QL K+T+  LK+          S               F A L  FQ  QR  +E+E      + +A   S  +A E       +S D   E + +  +S+  EV + +                          VN++FKDLA+++H+QG +ID I +++E+S+V   +   QL +AA  Q+ +    C+L
Sbjct:   27 QTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKES---IARARAGSRLSAEERQREEQLVSFDSHEEWNQM--QSQEDEVAITEQDLELIKERETAIRQLEADILD----VNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERATEQLQRAAYYQKKSRKKMCIL 254          
The following BLAST results are available for this feature:
BLAST of CK933948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SYP22_ARATH7.456e-8264.98Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 ... [more]
SYP23_ARATH1.967e-7462.04Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 ... [more]
SYP21_ARATH5.555e-6152.27Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 ... [more]
SYP24_ARATH1.628e-3649.23Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
STX7_PONAB2.789e-2028.45Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3[more]
STX7_RAT6.214e-2028.45Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4[more]
STX7_HUMAN6.214e-2028.45Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4[more]
STX7_MOUSE4.028e-1928.45Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3[more]
STX7A_DICDI1.936e-1324.44Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A P... [more]
STX12_HUMAN9.609e-1325.32Syntaxin-12 OS=Homo sapiens GN=STX12 PE=1 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004543_C01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933948 ID=CK933948; Name=CK933948; organism=Citrus sinensis; type=EST; length=856bp
GGGGGCGGAGTTCTCTTGTATTCCCGTTGGGCTCTCAGCTATCCTTGTGT
CCAATCACACCAAATATCAATCGGCTTTGGAGAAAATGAGCTTTCAAGAT
CTGGAGGCGGGGCGGCCGGTGAGTTCGTTGAGGAGAAATTTGGTGAATGG
AAAGCAAGACTCAACGCAGGCCGTTGCTTCTGGAATCTTCCAGATCAATA
CCGCCGTCTCCACGTTTCAAAGACTCGTTAATACGCTTGGGACTCCCAAG
GATACGCCCGAGCTTCGCGAGAAGATACACAAGACAAGGCTACATATCGG
GCAATTGGTGAAGGATACTTCAGCTAAACTTAAACAAGCCAGTGAAACAG
ATCATCATGCTCAAGTTAGTGCCGACAAGAAGATTGCAGATGCTAAACTA
GCCAAAGATTTTCAAGCAGTTTTAAAAGAGTTTCAGAAGGCTCAAAGGCT
TGCAGCTGAAAGGGAAACAGCATACACTCCTTTTGTCCCACAGGCAGTTC
TTCCTTCCAGCTATACAGCCCATGAACTAGATATAAGTTCAGATAGGAGT
GCAGAACAGCATGCGCTTCTTGTGGAATCTAGAAGACAGGAGGTTGTGCT
ATTGGACAATGAGATTGCCTTCAATGAGGCTATAATTGAAGAGAGAGAGC
TCGGAATACAAGAAATCCAACAACAAATTGGTGAAGTGAATGAGGTTTTC
AAAGATCTTGCTGTATTAGTCCATGAGCAAGGAACTATCATTGATGATAT
TGGATCTCATATTGAAAATTCCCAAGTAGCAACTGCACAGGGAAAATCAC
AACTTGTGAAAGCTGCCAAGACCCAAAGATCAAATTCTTCTTTTGACTGT
CTGCTT
back to top