CK933950
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22 Identity = 62/202 (30.69%), Postives = 103/202 (50.99%), Query Frame = 3 Query: 189 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788 AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL +RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EARL +L ++ Y EAL L + L++ + +L IY PP Q T+D+Q Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQ 213
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22 Identity = 62/202 (30.69%), Postives = 103/202 (50.99%), Query Frame = 3 Query: 189 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788 AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL +RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EARL +L ++ Y EAL L + L++ + +L IY PP Q T+D+Q Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQ 213
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3) HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22 Identity = 62/202 (30.69%), Postives = 103/202 (50.99%), Query Frame = 3 Query: 189 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788 AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL +RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EARL +L ++ Y EAL L + L++ + +L IY PP Q T+D+Q Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQ 213
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.436e-20 Identity = 62/199 (31.16%), Postives = 97/199 (48.74%), Query Frame = 3 Query: 195 AKEASNPSDAISMLYRVLDDPSSSSEAL-RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788 A ++++ AI + VL+ S E + +E A+T LSDL +ENR DL L+ Q RP + KAK+AKIVR +ID + + LQI + + ++W EKRTFLRQ +E +L +L ++ YT+A+ L+ +L+ + ++R +Y PP QG +DLQ Sbjct: 13 AVKSNDIEKAIDLYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDAINLINTLLSELKRMDDKMLLTEVHLLESKVYHAIRNIPKARASLTAAKTSANAVYCPPMLQGNLDLQ 211
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16 Identity = 61/202 (30.20%), Postives = 86/202 (42.57%), Query Frame = 3 Query: 192 QAKEASNPSD---AISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788 Q +E N D AI ++L S + +KE AI L+ L + + L LL +RPFF I K KT KIVR ID + +P I KE +QW + R +LRQR+E +L L+ E+ +Y AL+ LT+L+ +L+ IY PP Q ID+Q Sbjct: 6 QLEEIGNCQDSNKAIQDYNKILTIQESPDD---IKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEIQLVESRIQHALKNIPKARAALTSARTNANTIYCPPKLQAEIDMQ 204 The following BLAST results are available for this feature:
BLAST of CK933950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK933950 ID=CK933950; Name=CK933950; organism=Citrus sinensis; type=EST; length=790bpback to top |