CK933950

Overview
NameCK933950
Unique NameCK933950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1643 contig Csv1_Contig1643:1..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 62/202 (30.69%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  189 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  ++  Y EAL L + L++                     + +L                   IY PP  Q T+D+Q
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQ 213          
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 62/202 (30.69%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  189 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  ++  Y EAL L + L++                     + +L                   IY PP  Q T+D+Q
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQ 213          
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 7.574e-22
Identity = 62/202 (30.69%), Postives = 103/202 (50.99%), Query Frame = 3
Query:  189 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  ++  Y EAL L + L++                     + +L                   IY PP  Q T+D+Q
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQ 213          
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.436e-20
Identity = 62/199 (31.16%), Postives = 97/199 (48.74%), Query Frame = 3
Query:  195 AKEASNPSDAISMLYRVLDDPSSSSEAL-RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788
            A ++++   AI +   VL+   S  E +   +E A+T LSDL  +ENR  DL  L+ Q RP  +   KAK+AKIVR +ID  +    +  LQI +  + ++W   EKRTFLRQ +E +L +L  ++  YT+A+ L+ +L+                      + ++R                  +Y PP  QG +DLQ
Sbjct:   13 AVKSNDIEKAIDLYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDAINLINTLLSELKRMDDKMLLTEVHLLESKVYHAIRNIPKARASLTAAKTSANAVYCPPMLQGNLDLQ 211          
BLAST of CK933950 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 61/202 (30.20%), Postives = 86/202 (42.57%), Query Frame = 3
Query:  192 QAKEASNPSD---AISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESGEYTEALTLLTSLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAXQGTIDLQ 788
            Q +E  N  D   AI    ++L    S  +   +KE AI  L+ L  +  +   L  LL  +RPFF  I K KT KIVR  ID  + +P      I   KE +QW +   R +LRQR+E +L  L+ E+ +Y  AL+ LT+L+                        +L+                  IY PP  Q  ID+Q
Sbjct:    6 QLEEIGNCQDSNKAIQDYNKILTIQESPDD---IKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEIQLVESRIQHALKNIPKARAALTSARTNANTIYCPPKLQAEIDMQ 204          
The following BLAST results are available for this feature:
BLAST of CK933950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSD11_MOUSE7.574e-2230.6926S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_HUMAN7.574e-2230.6926S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_BOVIN7.574e-2230.6926S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_SCHPO2.436e-2031.16Probable 26S proteasome regulatory subunit rpn6 OS... [more]
PSD11_DICDI4.755e-1630.2026S proteasome non-ATPase regulatory subunit 11 OS... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004543_C03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933950 ID=CK933950; Name=CK933950; organism=Citrus sinensis; type=EST; length=790bp
GGGGAACCGAGGTTGCTTGTGATAGTCGTGCCTCTTTCTCTCGTCTCAGT
CTCCTCACTGCTTGTTGAGTTTCGGTTCAGAAACCCTAATCTCCGCACTC
ATCTTCTCTTTCTCTCTTCGACCGGAGTTGATTATTCCTGATTGAAGTCA
TGTCTTCATCATATCTTCCTGCAACAACAGACTCTATTGCGCAGGCTAAA
GAAGCCAGTAATCCATCCGATGCTATATCTATGCTTTACCGTGTACTTGA
CGATCCTTCTTCCTCTTCAGAAGCTCTCCGTGTAAAAGAATTGGCTATCA
CAGAACTATCTGACCTTCTTAGACAGGAGAACCGGGCTCAGGATCTTTGC
AACCTTCTTACTCAGTTGAGACCCTTCTTTTCATTGATCCCTAAGGCTAA
AACTGCCAAAATTGTAAGAGGAATTATTGATGCTGTTGCCAAGATACCTG
GGACATCTGAACTCCAAATTGCTCTATGCAAAGAAATGGTACAATGGACC
CGTGCGGAAAAGCGTACATTTCTTAGGCAACGAGTTGAGGCTAGGCTTGC
AGCTCTTTTGATGGAGAGTGGGGAGTACACAGAGGCATTGACCCTGCTTA
CTAGCTTGGTCAAAGAGGTGAGGAGATTAGATGACAAACTCCTTCTTGTA
GACATAGACTTGTTGGAAAGTAAGCTACATTTTTCATTAAGAAACCTCCC
AAAGGCAAAGGCTGCCCTCACAGCAGCGAGGACAGCTGCAAATGCTATAT
ATGTGCCACCGGCTNCACAAGGCACTATAGATTTGCAGAG
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