CK933955

Overview
NameCK933955
Unique NameCK933955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933955_ssr5 microsatellite CK933955_ssr5:5..26. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933955_ssr27 microsatellite CK933955_ssr27:27..40. BLAST: Citrus ESTs to Prunus persica proteins V1
CK933955_ssr26 microsatellite CK933955_ssr26:26..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 2.131e-67
Identity = 122/152 (80.26%), Postives = 130/152 (85.53%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVLG +EGVKGT+ F QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 8.098e-67
Identity = 120/152 (78.95%), Postives = 130/152 (85.53%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVL  +EGV GT+ F+QEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAP DDNRHA            TA+FT+ D QIPL+G NS+IGRAVVVH DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.058e-66
Identity = 121/152 (79.61%), Postives = 129/152 (84.87%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVLG +EGVKGT+ F QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTGPHFNPAG EHGAPED+ RHA            T    +VD+QIPLSG NSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.058e-66
Identity = 117/152 (76.97%), Postives = 131/152 (86.18%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAV VL  +EGV GTV F QEG GPTTV+G++SGL+PG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED+ RHA            TATFT++D+QIPL+GPNSI+GRAVVVHADPDDLG+GGHELSK+TGNAGGRVACG+IGLQG
Sbjct:    1 MVKAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDETRHAGDLGNITVGDDGTATFTIIDSQIPLTGPNSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVACGVIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.804e-66
Identity = 120/152 (78.95%), Postives = 129/152 (84.87%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAVAVLG ++GVKGT+ F QEGDGPT V+GS+SGLKPG HGFHVHALGDTTNGCMSTGPH+NPA KEHGAPED+NRHA             A   V D+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.077e-66
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            M KAV VL  +EGV GTV FAQEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTGPH+NP GKEHGAPEDD RHA            TATFT++D+QIPLSGPNSI+GRAVVVHA+PDDLG+GGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MGKAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQIPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.169e-65
Identity = 117/152 (76.97%), Postives = 129/152 (84.87%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVK VAVL  +EGV GT+ F QEGDGPTTV+G++SGLKPGPHGFHVHALGDTTNGC+STGPHFNPAGKEHGAP+D+ RHA            TA FT+VD QIPL+GP+SIIGRAVVVHADPDDLGKGGHELSK+TGN GGRVACGI GLQG
Sbjct:    1 MVKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.169e-65
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.169e-65
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 568
            MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTGPH+NPAGKEHGAPED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152          
BLAST of CK933955 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.605e-65
Identity = 118/151 (78.15%), Postives = 130/151 (86.09%), Query Frame = 2
Query:  113 MVKAVAVLGGTEGVKGTVSFAQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 565
            MVKAVAVL G+EGV+GTV FAQEG+GPTT++GSLSGLKPG HGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED NRHA            T  FTV D+QIPL+G NS++GRAVVVHAD DDLGKGGHELSK+TGNAGGR+ACG+IGLQ
Sbjct:    1 MVKAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLACGVIGLQ 151          
The following BLAST results are available for this feature:
BLAST of CK933955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC4_MAIZE2.131e-6780.26Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_IPOBA8.098e-6778.95Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_ANACO1.058e-6679.61Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC1_MESCR1.058e-6676.97Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC5_MAIZE1.804e-6678.95Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_SPIOL3.077e-6678.29Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PAUKA1.169e-6576.97Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC1_ORYSJ1.169e-6578.29Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI1.169e-6578.29Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_ZANAE2.605e-6578.15Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933955 ID=CK933955; Name=CK933955; organism=Citrus sinensis; type=EST; length=810bp
GGGGACACACACACACACACACACACTCTCTCTCTCTCTCACTCCCTCTT
TCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGA
TCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGG
TGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTG
TATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTT
CATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTT
TAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATG
CTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTT
ACAGTTGTTGACAATCAGATTCCACTTTCTGGACCAAATTCCATTATTGG
AAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTC
ATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGC
ATCATTGGCCTCCAAGGGTGAAGCCTTATCTCATCGGACAATAATAAATT
CATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGT
GACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTATAACTTTGTTGT
GTATCTTGGATGGTTTTCTTATAATCTCCATCTTTACATTTTCATTTAGT
TTATCCTCAGCTTTTGCTTAGTGTTTAACTTGCAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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