CK933968

Overview
NameCK933968
Unique NameCK933968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933968_ssr302 microsatellite CK933968_ssr302:302..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2527 contig Csv1_Contig2527:60..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933968 vs. ExPASy Swiss-Prot
Match: KEG_ARATH (E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.558e-16
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 2
Query:    5 THASKGQVVGVDANGKLRIKFQWREGRPWIGDPADIVLDECS 130
            THASKG VVGVDANGKLRIKF WREGRPWIGDPADIVLDE S
Sbjct: 1583 THASKGHVVGVDANGKLRIKFLWREGRPWIGDPADIVLDETS 1624          
The following BLAST results are available for this feature:
BLAST of CK933968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KEG_ARATH5.558e-1692.86E3 ubiquitin-protein ligase KEG OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004543_A06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933968 ID=CK933968; Name=CK933968; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCATGCAAGCAAAGGGCAAGTGGTTGGTGTAGATGCAAACGGGA
AGTTAAGAATTAAATTTCAATGGAGAGAAGGGAGACCATGGATTGGAGAT
CCTGCTGATATTGTGCTTGACGAGTGCTCATCTTGCAGAACAGGCACTTC
GTGAATTGTGATTGCTATCAAATTTTCTTGCAGTTTGTTATAGAAGCTTC
TTCTCCCAACAGATGTGGGGCTGTGAATTCCACTGCATCACGCAGTTAGA
TTTGGAGTTTGCTCTCCAAACAATATGCGAAGTTATCGTGGGGATGATCC
AATTTATTTATTTCAATAAAATGGAAATACAGATAGATGGAAACTGAGCA
CATGATGGAGAAATTGGCTTGCCTTACTGTTAATTATAGGAAATACGAAA
GCAGCCAGGCAAAAAAAGTAGCTGTAGGCCATTTGTATCTCATAGATGAT
GGTTGTAGGTTGTAAGTTTTTGAGGTATATATATGTGATCATTTATATGT
ATTTTGTACAAATTGAACACTAATCTTGTGAGTTTTCACTTAATGGGTTC
TTTTATAGCAATGTTATCTTCCTGCTTACCCAACACTTTCTCCAATTCTT
TGACTGAAAAGAAATGGTGAATATATATTGTAAACTAAACATCGCCCTCC
CCCTGATGTGACCAAATTTTTGATATGTACAGCTATATGTATATGCAGCT
GATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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