CK933969

Overview
NameCK933969
Unique NameCK933969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933969_ssr159 microsatellite CK933969_ssr159:159..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK933969 vs. ExPASy Swiss-Prot
Match: OEP80_ARATH (Outer envelope protein of 80 kDa OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 3 
Query:  318 TSSPLSLVIGSLCIKHPNLFGGSEKLDVSWDKGLYDSNVLVAYRRP---GPEWLSQQCFVIQHSLSPEVGVHGLPIDNFSRSGSGGVNLSRLSLGLDISEPISSKWSNTTSLKFE 653
            TS PLS +IGS    H NLFG ++KL+VS ++G  DS   + Y  P   G +  + +  ++Q+S +P   VHG   DN S      + + R++ G++ S P   KW+ T  L F+
Sbjct:  412 TSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMVQNSRTPGNLVHGNQPDNSS------LTIGRVTAGVEYSRPFRPKWNGTAGLIFQ 520
The following BLAST results are available for this feature:
BLAST of CK933969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OEP80_ARATH2.951e-1135.65Outer envelope protein of 80 kDa OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004543_A08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933969 ID=CK933969; Name=CK933969; organism=Citrus sinensis; type=EST; length=708bp
GGGACCCATCAGCACAAGCCAAGACCAAAAACNNNACGCTCGCCCAGAGC
ACCACACACATACACAGCACAAAACATTTTGCATGGTCGCACACTTAAAC
TTGATAATTGTTTCATTCATTATTGCAGAAAACGGAAAAACAAAATCCTT
CCCATTTGATTAATTAATTAATTTATGTTTTATGAATAACCATCACCACT
AGTAATGTCGCTATGGGCGCTCAGAAGAGCATCCATGCTGGCAAAGCCAA
GATTGATGTTAACGTCGATTTCACTCACAAGCTGTGTGCTTCTTTGATGC
TTCCTCCTCCCAGGAACACTAGCAGTCCTCTTTCTCTTGTTATCGGCAGT
CTTTGCATCAAACATCCAAACTTGTTTGGTGGAAGTGAGAAGCTTGATGT
ATCATGGGATAAGGGTCTTTATGATTCAAATGTTTTAGTTGCTTATCGGA
GGCCAGGGCCCGAATGGCTTTCTCAACAGTGTTTTGTTATTCAGCATTCT
CTTTCACCAGAAGTGGGGGTACATGGTCTGCCAATAGACAATTTCTCCCG
TTCAGGGAGTGGAGGAGTGAATTTGTCTCGTTTATCACTGGGATTGGATA
TAAGTGAGCCTATAAGTTCAAAATGGAGCAACACAACTAGTTTAAAATTT
GAGGTTTGATGAAGACTCTTTACTTATCACTTCATAGTTTCTACTAGCAT
GTTCGGCC
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