CK933988

Overview
NameCK933988
Unique NameCK933988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXB2_DICDI (Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.188e-39
Identity = 85/227 (37.44%), Postives = 129/227 (56.83%), Query Frame = 1
Query:  208 IWPLPAQFTSGNDTLSVDPALYLXXXXXXXXXXXXXEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLV--AKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVED 882
            IWP+P +  +G+ T+ + P  +              +A +RY  +IF  + +  +  S+ N              +KI+V S++E LQ+G DESY + +  + ++G  II E      TVYGA+RGLET  Q+  FDY  +   +   PW IQD PR+  RG+++DTSRH+  VDV+K+ IE+++Y K NV HWH +D QSFPL   T+P + KG++S  E Y+  D
Sbjct:   59 IWPMPKKVLNGDITVYISP--HFQFTTNLTKSTTLKKAMDRYYKLIFTEDSKSHSGISILNE-------------IKILVKSEDETLQIGFDESYEIYIDDSGDDGGKIIAE------TVYGAIRGLETLYQMIGFDYQREYYQIKHCPWIIQDSPRYPHRGVMLDTSRHFYSVDVLKEFIEALAYNKFNVFHWHAVDSQSFPLTSTTFPKITKGSWSSQEIYSTRD 264          
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXB1_DICDI (Beta-hexosaminidase subunit B1 OS=Dictyostelium discoideum GN=hexb1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.468e-35
Identity = 90/226 (39.82%), Postives = 120/226 (53.10%), Query Frame = 1
Query:  208 IWPLPAQFTSGNDTLSVDPALYLXXXXXXXXXXXXXEAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKA-PWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVED 882
            IWP P     GN+++ +                   +   +Y  +IF  +   +NS S  N   K          L I + S NE L+ G DESY L++  NE       + +E NTVYG +RGLETF QL  +++   S  +    P  I DKPRF  RG+++DTSRH+  VD I ++IES+SY K N LHWHIID QSFPL   +YPNL  GA+SK E Y+  D
Sbjct:   48 IWPAPFYGQFGNNSILISKEFNFTIISDSTLLLN--KTLSKYYNLIFTQD-NLINSSS--NTLNK----------LNINLKSKNEILKFGFDESYKLIIKNNEN------SKLEGNTVYGIMRGLETFYQLIKYNFSDNSYFIENCLPLIINDKPRFPHRGVMLDTSRHFYSVDTILKVIESLSYNKFNTLHWHIIDSQSFPLSSKSYPNLINGAWSKSEIYSYHD 252          
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXA1_DICDI (Beta-hexosaminidase subunit A1 OS=Dictyostelium discoideum GN=hexa1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.972e-29
Identity = 60/150 (40.00%), Postives = 98/150 (65.33%), Query Frame = 1
Query:  433 LKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLWKGAYSKWERYTVED 882
            L + ++SD+E LQLG+DESY+L + +       G   ++A  +YGA+RGLETF QL  ++    S  +      I D PR+ +RG ++D++RHY+P ++I  +I+S+ ++K N LHWH++D  +FP+E  TYP+L KGA+S    ++ +D
Sbjct:   84 LSVTIYSDDETLQLGIDESYSLSIEQ-------GSYQLKATNIYGAMRGLETFKQLIVYNELENSYSIVCVS--ISDSPRYPWRGFMVDSARHYIPKNMILHMIDSLGFSKFNTLHWHMVDAVAFPVESTTYPDLTKGAFSPSATFSHDD 224          
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXA2_DICDI (Beta-hexosaminidase subunit A2 OS=Dictyostelium discoideum GN=hexa2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.471e-27
Identity = 69/173 (39.88%), Postives = 102/173 (58.96%), Query Frame = 1
Query:  319 AFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNL 837
            +  RY+++ F           V NN  K  S   +   L +++ SD+E L+LG+DESY LLV ++          I+ANT+YGA+RGLETF Q+  +D    S  +  A   + D P + +RGLL+D +RH+LP +++  II+SM Y K N +HWH+ID  +FP+E  TYP L
Sbjct:   66 SISRYQSLFFPF---------VSNNVLKDSSSNIE---LSLIIASDDETLELGIDESYFLLVNQDT-------YQIKANTIYGAMRGLETFKQMVVYDVVENSYSLTCAE--VVDYPTYQWRGLLVDNARHFLPKNMVLHIIDSMGYNKFNTMHWHLIDTVAFPVESKTYPKL 217          
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXB_HUMAN (Beta-hexosaminidase subunit beta OS=Homo sapiens GN=HEXB PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.626e-26
Identity = 70/136 (51.47%), Postives = 90/136 (66.18%), Query Frame = 1
Query:  481 DESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVED 882
            DESYTLLV +         A ++AN V+GALRGLETFSQL   D Y T ++        I D PRF+ RG+LIDTSRHYLPV +I + +++M++ K NVLHWHI+D+QSFP +  T+P L  KG+YS    YT  D
Sbjct:  146 DESYTLLVKEPV-------AVLKANRVWGALRGLETFSQLVYQDSYGTFTINEST----IIDSPRFSHRGILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPND 270          
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXB_RAT (Beta-hexosaminidase subunit beta OS=Rattus norvegicus GN=Hexb PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.124e-26
Identity = 70/138 (50.72%), Postives = 89/138 (64.49%), Query Frame = 1
Query:  481 DESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAH 888
            DESY+LLV +   L       ++AN V+GALRGLETFSQL   D Y T ++        I D PRF  RG+LIDTSRHYLPV  I + +++M++ K NVLHWHI+D+QSFP +  T+P L  KG+YS    YT  D H
Sbjct:  124 DESYSLLVQEPVAL-------LKANEVWGALRGLETFSQLVYQDAYGTFTINEST----IADSPRFPHRGILIDTSRHYLPVKTIFKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSHVYTPNDIH 250          
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXB_FELCA (Beta-hexosaminidase subunit beta OS=Felis catus GN=HEXB PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.623e-26
Identity = 85/200 (42.50%), Postives = 112/200 (56.00%), Query Frame = 1
Query:  316 EAFERYKAIIFEHEVEGVNSHSVFNNFRKRR----SWGFDIGTLKIVVHSDNE-DL--QLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFD-YDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVEDAH 888
            EAF RY   IF  +             R+RR    +   ++  L + V  D+E DL   +  DESYTLLV +         A ++AN V+G LRGLETFSQL   D Y T +V        I D PRF  RG+LIDT+RH+LPV  I + +++M++ K NVLHWHI+D+QSFP +  T+P L  KG+YS    YT  D H
Sbjct:   70 EAFRRYHEYIFGFDK------------RQRRPAKPNSAIELQQLLVTVVLDSECDLFPNITSDESYTLLVKEPV-------AFLKANRVWGVLRGLETFSQLIYQDSYGTFTVNESD----IIDSPRFPHRGILIDTARHFLPVKSILKTLDAMAFNKFNVLHWHIVDDQSFPYQSVTFPELSNKGSYSLSHVYTPNDVH 246          
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXB_MOUSE (Beta-hexosaminidase subunit beta OS=Mus musculus GN=Hexb PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 69/152 (45.39%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  433 LKIVVHSDNEDL-QLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWERYTVED 882
            + I + S+ E    L  DE+Y+LLV +         A ++AN+V+GALRGLETFSQL   D      +   +   I D PRF  RG+LIDTSRH+LPV  I + +++M++ K NVLHWHI+D+QSFP +  T+P L  KG+YS    YT  D
Sbjct:  108 VSITLESECESFPSLSSDETYSLLVQEPV-------AVLKANSVWGALRGLETFSQLVYQDSFGTFTINESS---IADSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHWHIVDDQSFPYQSTTFPELSNKGSYSLSHVYTPND 249          
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXA_RAT (Beta-hexosaminidase subunit alpha OS=Rattus norvegicus GN=Hexa PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.429e-24
Identity = 72/191 (37.70%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  316 EAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWER-YTVED 882
            EAF RY++++F     G  S    +  +K++  G +I  + +V    NE   L   E+YTL +  ++ L       + + TV+GALRGLETFSQL    + +     +     I D PRF  RG+L+DTSRHYLP+  I   ++ M+Y K NV HWH++D+ SFP E  T+P L  KG+++     YT +D
Sbjct:   63 EAFRRYRSLLF-----GSGSWPRPSFSKKQQPLGKNILMVSVVTAECNEFPNLESVENYTLTINDDQCL-------LSSETVWGALRGLETFSQLV---WKSAEGTFFINKTKITDFPRFPHRGILLDTSRHYLPLSSILNTLDVMAYNKFNVFHWHLVDDSSFPYESFTFPELTRKGSFNPVTHIYTAQD 238          
BLAST of CK933988 vs. ExPASy Swiss-Prot
Match: HEXA_MOUSE (Beta-hexosaminidase subunit alpha OS=Mus musculus GN=Hexa PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.429e-24
Identity = 73/191 (38.22%), Postives = 108/191 (56.54%), Query Frame = 1
Query:  316 EAFERYKAIIFEHEVEGVNSHSVFNNFRKRRSWGFDIGTLKIVVHSDNEDLQLGVDESYTLLVAKNEGLSIIGEATIEANTVYGALRGLETFSQLCSFDYDTKSVLVYKAPWYIQDKPRFAFRGLLIDTSRHYLPVDVIKQIIESMSYAKLNVLHWHIIDEQSFPLEVPTYPNLW-KGAYSKWER-YTVED 882
            EAF RY+ ++F     G      F+N  K+++ G +I  + +V    NE   L   E+YTL +  ++ L       + + TV+GALRGLETFSQL    + +     +     I+D PRF  RG+L+DTSRHYLP+  I   ++ M+Y K NV HWH++D+ SFP E  T+P L  KG+++     YT +D
Sbjct:   63 EAFRRYRNLLFG---SGSWPRPSFSN--KQQTLGKNILVVSVVTAECNEFPNLESVENYTLTINDDQCL-------LASETVWGALRGLETFSQLV---WKSAEGTFFINKTKIKDFPRFPHRGVLLDTSRHYLPLSSILDTLDVMAYNKFNVFHWHLVDDSSFPYESFTFPELTRKGSFNPVTHIYTAQD 238          
The following BLAST results are available for this feature:
BLAST of CK933988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
HEXB2_DICDI2.188e-3937.44Beta-hexosaminidase subunit B2 OS=Dictyostelium di... [more]
HEXB1_DICDI1.468e-3539.82Beta-hexosaminidase subunit B1 OS=Dictyostelium di... [more]
HEXA1_DICDI5.972e-2940.00Beta-hexosaminidase subunit A1 OS=Dictyostelium di... [more]
HEXA2_DICDI1.471e-2739.88Beta-hexosaminidase subunit A2 OS=Dictyostelium di... [more]
HEXB_HUMAN1.626e-2651.47Beta-hexosaminidase subunit beta OS=Homo sapiens G... [more]
HEXB_RAT2.124e-2650.72Beta-hexosaminidase subunit beta OS=Rattus norvegi... [more]
HEXB_FELCA3.623e-2642.50Beta-hexosaminidase subunit beta OS=Felis catus GN... [more]
HEXB_MOUSE1.798e-2545.39Beta-hexosaminidase subunit beta OS=Mus musculus G... [more]
HEXA_RAT4.429e-2437.70Beta-hexosaminidase subunit alpha OS=Rattus norveg... [more]
HEXA_MOUSE4.429e-2438.22Beta-hexosaminidase subunit alpha OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004542_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933988 ID=CK933988; Name=CK933988; organism=Citrus sinensis; type=EST; length=889bp
GGGGATCTCTCCTCCACTTTCGCTTCGCTGCAGCTGTTCATCAGATCACT
TTGGTTTTCCAAAGGAATCTCCGTAAACCAAACCACAATGTTGCTCAAAT
CCCAAGAACATCTCTCAGTTCTCAAAGTTATAATCATCACCGCACTTCTC
ATCATTTTCACTTCCTCCCTTTCTGTCTCCACCGACGTGGACGATTCCCT
CGCTTACATCTGGCCTTTGCCAGCGCAATTCACTTCCGGTAACGACACGC
TCTCCGTTGACCCAGCTCTTTATCTCTCCGTTTCGGGAAAAGGGTCGGGC
TCGAAGATTGTTAAAGAAGCGTTCGAGAGATACAAAGCTATTATTTTCGA
GCACGAAGTCGAAGGGGTTAATTCCCATTCTGTGTTTAATAATTTTAGAA
AGAGGAGATCGTGGGGTTTTGATATTGGAACATTGAAGATTGTTGTTCAT
TCGGATAATGAAGACTTGCAGCTTGGTGTTGATGAGAGTTACACTTTGTT
GGTGGCTAAGAATGAGGGGCTGTCAATTATTGGAGAGGCAACAATAGAGG
CAAATACAGTTTATGGTGCTCTGCGAGGATTGGAGACATTCAGCCAATTG
TGTTCTTTTGACTATGATACTAAATCCGTACTAGTATATAAAGCACCGTG
GTACATCCAAGACAAACCAAGATTTGCATTTCGTGGCCTTCTGATTGATA
CATCAAGGCACTATTTACCAGTAGATGTCATTAAGCAGATAATTGAATCT
ATGTCATATGCAAAACTTAATGTCCTTCATTGGCATATCATAGACGAGCA
GTCATTTCCTCTTGAAGTGCCTACATATCCAAATTTGTGGAAGGGCGCAT
ATTCAAAGTGGGAGCGCTACACGGTTGAGGATGCCCATG
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