CK934016

Overview
NameCK934016
Unique NameCK934016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934016 vs. ExPASy Swiss-Prot
Match: LRE_ARATH (GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40
Identity = 74/124 (59.68%), Postives = 95/124 (76.61%), Query Frame = 3
Query:  138 VFLSIFLLFILMGLSSATFISDGIFESH-AFTGRNLLQAKKACPVNFEFLNYTITTSKCKGPQFPPDKCCSAFKEFACPYADQINDLTTDCATTMFSYINLYGKYPPGLFASECLKGKRGLECP 506
            + L  FL+ +L+ LSS++ ISDG+FES  + +GRNL  AKK C VNFE+++Y + T +CKGP FP  +CCSAFKEFACPY  QIND+ +DCA TMFSY+N+YG YP GLFA+EC + K GL CP
Sbjct:    4 ILLFFFLMALLVSLSSSSSISDGVFESQTSVSGRNLRHAKKKCEVNFEYMDYKVLTKRCKGPAFPAKECCSAFKEFACPYVSQINDMNSDCAQTMFSYMNIYGNYPTGLFANECRERKDGLVCP 127          
The following BLAST results are available for this feature:
BLAST of CK934016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LRE_ARATH1.825e-4059.68GPI-anchored protein LORELEI OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004542_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934016 ID=CK934016; Name=CK934016; organism=Citrus sinensis; type=EST; length=724bp
GGGGGTCGCTGTCTGTTGCATACTGGTTTTGTACAAGCGTGTAAAAAGCT
TCTATCTTTTTTGAAGAGAATAGGTGGGAGCACAAAAAAAATTGGATCTT
TTCTGGTGCTGTGAGAGAAATGGTGGAGTTCAACAGAGTGTTTCTATCTA
TTTTTCTTTTGTTTATTTTGATGGGTTTGTCTTCTGCAACTTTCATTTCA
GATGGTATCTTTGAATCGCACGCTTTTACTGGCAGAAATCTTCTCCAGGC
TAAGAAAGCATGCCCCGTGAATTTCGAGTTTCTGAACTACACAATCACCA
CAAGCAAATGCAAAGGACCCCAGTTTCCACCTGACAAATGCTGTAGTGCT
TTTAAGGAATTTGCTTGTCCTTATGCAGATCAGATTAATGACTTGACGAC
AGACTGCGCTACAACCATGTTCAGCTACATTAACCTGTATGGGAAATACC
CTCCTGGTCTTTTTGCCAGCGAGTGTCTGAAAGGGAAGCGAGGTCTTGAA
TGTCCTGCATCGGCACCAACTCAGTCGGCAAATGCAGATCACACGTTAAA
AAAACCCAATTAAGAATTTAAAATTTTTTTGACGTTTTTGTATTTATCTA
AACATACAATCTCGTAATGAGATTTGCTTTATAACAAATAAAATATTGTT
CTTGTAATGATCAAGTTACATTTATTAATGGACTTCATCAATCGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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