CK934020

Overview
NameCK934020
Unique NameCK934020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9421 contig Csv1_Contig9421:78..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK934020 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.362e-15
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = 3 
Query:   42 YMVRAKIGTPAQTLLMAMDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYG-SSTIAANLSQDTISLATDIVPGYTFGCIQKATG 374
            Y++   IGTPAQ     MDT +D  W    PCT C   S+ +FN   S++F  L C +  C+ + +PTC    C +   YG  S    ++  +T++  +  +P  TFGC +   G
Sbjct:   95 YLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQLCQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPNITFGCGENNQG 209
[Close]
BLAST of CK934020 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 3 
Query:   42 YMVRAKIGTPAQTLLMAMDTSNDAAWV---PCTGCVGCSSTVFNSAQSTTFKNLGCQAAQCKQVPNPTCGGGACAFNLTYG-SSTIAANLSQDTISLATDIVPGYTFGC 356
            Y++   IGTP  +    MDT +D  W    PCT C    + +FN   S++F  L C++  C+ +P+ TC    C +   YG  ST    ++ +T +  T  VP   FGC
Sbjct:   96 YLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCESQYCQDLPSETCNNNECQYTYGYGDGSTTQGYMATETFTFETSSVPNIAFGC 204
The following BLAST results are available for this feature:
BLAST of CK934020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR7.362e-1533.04Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR2.142e-1433.03Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004542_D08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IVF_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934020 ID=CK934020; Name=CK934020; organism=Citrus sinensis; type=EST; length=536bp
TGCCCATAGCCTCTGGCAGGCAGATCACCCAAAGCCCTACTTATATGGTT
AGGGCAAAAATTGGGACACCGGCACAAACATTGCTCATGGCCATGGATAC
TAGCAATGATGCTGCTTGGGTTCCATGCACTGGCTGTGTTGGCTGCTCTT
CCACCGTTTTTAATTCTGCTCAATCCACCACATTCAAAAACCTTGGTTGC
CAAGCTGCTCAATGCAAGCAGGTACCCAATCCCACCTGCGGGGGTGGCGC
GTGTGCATTCAATTTGACCTACGGCAGCTCCACCATTGCCGCAAACCTCT
CACAGGACACTATCTCCCTGGCCACTGATATAGTCCCTGGTTACACCTTC
GGCTGCATCCAAAAGGCCACGGGCAACTCGGTGCCGCCCCAAGGCCTGTT
GGGCCTGGGTCGTGGCTCATTATCCCTTTTGGCACAAACACAGAACCTCT
ATCAGTCCACTTTTTCTTACTGTTTGCCCAGCTTCAAGGCACTTAGCTTT
TCTGGGTCATAAAGATTAGGACCCATTGGTCAGCCC
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