CK934063

Overview
NameCK934063
Unique NameCK934063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1953 contig Csv1_Contig1953:104..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL1Q_ARATH (RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.964e-45
Identity = 84/144 (58.33%), Postives = 110/144 (76.39%), Query Frame = 1
Query:  310 ELLEASRAYWCLERTGSRGSSSMADFVEDLLRGRFIEEQFTPAILGAYHWQVRIASMSYDVNDTDCRAL-SRGLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 738
            E+LEASRAYW LE +GSRG SSMADFVE L RGR ++EQ    ++ ++HWQ+RI+ +SY+  +     L +RGL+G+SL+KLPC+++  E+   Q + C+ICLQDI  GE+ RSLP C HTFHL CVDKWLIRHGSCP+CR+ V
Sbjct:   78 EVLEASRAYWYLELSGSRGPSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEEREDVYGELEARGLSGDSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAV 221          
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.113e-27
Identity = 64/142 (45.07%), Postives = 83/142 (58.45%), Query Frame = 1
Query:  310 ELLEASRAYWCLERTGSRGSSSMADFVEDLLRGRFIEEQFTPAILGAYHWQV-RIASMSYDVNDTDCRALSRGLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRR 732
            E+ E+S   W  + +G      + D +  LL GR + E+  PA+L A   Q+  + S   D  D    A+S+GLTG+SL ++P   I D      S  CS+CLQD  VGE  RSLPHCHH FHL C+DKWL RH SCP+CRR
Sbjct:   80 EVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTSPEIVS--CSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCRR 219          
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.323e-25
Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = 1
Query:  310 ELLEASRAYWCLERTGSRGSSSMADFVEDLLRGRFIEEQFTPAILGAYHWQVRIASMSYDVNDT--DCRALSRGLTGESLKKLPCHVILDEIKPTQSS---CCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 738
            E+ E+S   W  + +G      + D +  LL GR + E+  PA+L A   Q+     ++D + +  D    S+GLTG+ ++K+P   I        S     CS+CLQD  +GE  RSLPHCHH FHL C+D WL+RHGSCP+CRRD+
Sbjct:   95 EVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGG-SKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241          
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.706e-23
Identity = 58/150 (38.67%), Postives = 82/150 (54.67%), Query Frame = 1
Query:  310 ELLEASRAYWCLERTGSRGSSSMADFVEDLLRGRFIEEQFTPAILGAYHWQVRIASMSYD----VNDTDCRALSRGLTGESLKKLPCHVILDEIKPTQSS---CCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 738
            E+ E+S   W    +       + D +  L+ GR + E+  PA+L A   Q+     +++    + DT     S+GLTG+ + K+P   I  +     S     CS+CLQD  +GE  RSLPHCHH FHL C+D WL RHGSCP+CRRD+
Sbjct:   90 EVFESSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAVDSTFEELSSIFDTGG---SKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236          
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  487 DVNDTDCRALSRGLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 738
            D  DT+   +++G+   +LK +P      E+K   + C  ICL D + GE  R LP C+H FH+ C+D WL+ H SCP CR+ +
Sbjct:   77 DPVDTNAN-VAKGIKKRALKVIPVDSYSPELKMKATECL-ICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158          
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.882e-12
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  499 TDCRALSRGLTGESLKKLPCHVILDEIK-PTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCR 729
            T C + ++G+  ++L+  P      E+  P     C ICL D + GE  R LP CHH FH+ C+DKWL +H +CP CR
Sbjct:  101 TPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCR 178          
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL2I_ARATH (RING-H2 finger protein ATL2I OS=Arabidopsis thaliana GN=ATL2I PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.133e-11
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1
Query:  523 GLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCR 729
            GL  ++++  P  +  +   PT +SCC+ICL D     L R LP C+H FHL C+D WL  + +CPVCR
Sbjct:  121 GLDEDTIQSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCR 189          
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1
Query:  523 GLTGESLKKLPCHVILDEIKPTQSSC-----CSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 738
            GLT   L  LP           Q SC     CSICL +++ G+ AR LP C+H+FH+ C+D W   H +CP+CR  V
Sbjct:  102 GLTSFELSSLPIVFF------RQDSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172          
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 31/80 (38.75%), Postives = 42/80 (52.50%), Query Frame = 1
Query:  517 SRGLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV*AYVGL 756
            SRGL    +K LP     DE       C ++CL +    E  R LP+C HTFH+ C+D W   H +CP+CR  V +  G+
Sbjct:   92 SRGLDPNVIKSLPVFTFSDETHKDPIEC-AVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGI 170          
BLAST of CK934063 vs. ExPASy Swiss-Prot
Match: ATL3C_ARATH (RING-H2 finger protein ATL3C OS=Arabidopsis thaliana GN=ATL3C PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  511 ALSRGLTGESLKKLPCHVILDEIKPTQSSCCSICLQDIIVGELARSLPHCHHTFHLACVDKWLIRHGSCPVCRRDV 738
            A + GL  ++LK++P  +    I   +++ C ICL D   GE  R LP C+H FH+ C+D WL+   SCP CR+ +
Sbjct:   84 AAATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159          
The following BLAST results are available for this feature:
BLAST of CK934063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ATL1Q_ARATH1.964e-4558.33RING-H2 finger protein ATL1Q OS=Arabidopsis thalia... [more]
ATL5P_ARATH4.113e-2745.07RING-H2 finger protein ATL5P OS=Arabidopsis thalia... [more]
ATL2B_ARATH1.323e-2540.54RING-H2 finger protein ATL2B OS=Arabidopsis thalia... [more]
ATL4M_ARATH4.706e-2338.67RING-H2 finger protein ATL4M OS=Arabidopsis thalia... [more]
ATL5B_ARATH3.738e-1239.29RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL1I_ARATH4.882e-1241.03RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
ATL2I_ARATH4.133e-1143.48RING-H2 finger protein ATL2I OS=Arabidopsis thalia... [more]
ATL1P_ARATH5.397e-1141.56RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL3F_ARATH9.206e-1138.75RING-H2 finger protein ATL3F OS=Arabidopsis thalia... [more]
ATL3C_ARATH9.206e-1139.47RING-H2 finger protein ATL3C OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004541_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934063 ID=CK934063; Name=CK934063; organism=Citrus sinensis; type=EST; length=869bp
GGGGATCTCTTTTTGCACGTGATCCCTCGCTCATTCAGTAACCAATATAC
GCCGGCTTCTCGCCCTTGCGGTAGCTCCGCTTCAGCTCCGCCCGCCAGCA
TGGATGATTTAGAATTCGAAGACCCCAACCTTTTCCAATCTATTCCCAAA
TTCATCGCTGGCGCCATTTCTGGCACCCTCACTGGTCTCTTCGCTCTGGC
TGGAGCTTTCACAGGGGCAATTACGGGTGCTTTAGCCGGCAGGGCTTCTG
ACTGTGGTGTTCTGCGAGGGGCTGGACTAGGTGCAATTGCCGGGGCTGTA
CTCTCTGTTGAGCTTTTGGAGGCTTCTCGTGCTTACTGGTGTTTGGAACG
GACTGGTTCTCGGGGCTCCTCGTCTATGGCAGACTTTGTTGAGGATCTTC
TCCGCGGGAGATTCATAGAGGAACAGTTTACTCCAGCCATATTAGGTGCT
TACCACTGGCAGGTAAGAATTGCTAGTATGAGTTACGATGTAAACGATAC
CGACTGTAGAGCTCTATCCAGAGGATTGACAGGAGAATCACTGAAAAAAT
TACCCTGTCACGTGATCTTGGATGAAATCAAGCCAACACAGAGTAGCTGC
TGCTCTATATGTTTACAGGATATCATTGTTGGGGAACTTGCAAGGAGCTT
GCCTCATTGTCACCACACTTTTCATTTGGCATGTGTGGACAAGTGGCTAA
TCAGACATGGCTCATGCCCTGTATGCAGACGGGATGTGTAGGCGTATGTA
GGTTTGTATTATAGTTTACAGAAAGAAAATTTGGGGTGAAACCAGCCAGT
CCACATATACATAGTGTGTTTGTATTGATGAGCATACAAGTCTTTCNAAG
TTATTTCTCTATATGTCAT
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