CK934071

Overview
NameCK934071
Unique NameCK934071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934071_ssr515 microsatellite CK934071_ssr515:515..526. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934071_ssr710 microsatellite CK934071_ssr710:710..721. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934071_ssr754 microsatellite CK934071_ssr754:754..777. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7230 contig Csv1_Contig7230:19..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934071 vs. ExPASy Swiss-Prot
Match: KIN17_HUMAN (DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.849e-61
Identity = 105/165 (63.64%), Postives = 131/165 (79.39%), Query Frame = 1
Query:   10 MGRNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVD 504
            MG+++FLTPKAIANRIK+KGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQ+ +  +NP + ++ +SEEF   FLEL+RR     R+   +VYNEYI  R H+HMN+T+W TLT+F K+LGR G CKV+ETPKGW+I YIDRD ET+ ++    K+ K D+ D
Sbjct:    1 MGKSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDD 165          
BLAST of CK934071 vs. ExPASy Swiss-Prot
Match: KIN17_MOUSE (DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.381e-61
Identity = 104/165 (63.03%), Postives = 131/165 (79.39%), Query Frame = 1
Query:   10 MGRNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVD 504
            MG+++FL+PKAIANRIK+KGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQ+ +  +NP + ++ +SEEF   FLEL+RR     R+   +VYNEYI  R H+HMN+T+W TLT+F K+LGR G CKV+ETPKGW+I YIDRD ET+ ++    K+ K D+ D
Sbjct:    1 MGKSDFLSPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDD 165          
BLAST of CK934071 vs. ExPASy Swiss-Prot
Match: KIN17_DICDI (KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.240e-57
Identity = 100/163 (61.35%), Postives = 124/163 (76.07%), Query Frame = 1
Query:   10 MGRNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDM 498
            MG+ + LTPK IAN+IKAKGLQ+LRWYCQ+C+KQCRDENGFKCH  SESH RQM++F      IV  YS+EFE  FL +M R    SR+ A  VY EYI DRHH+HMN+T W +LTEFVKYLG+T KC+VEETPKGWFI YI+RD E + ++  + K+ K ++
Sbjct:    1 MGKGDALTPKQIANKIKAKGLQRLRWYCQLCEKQCRDENGFKCHISSESHMRQMEVFSNKSSFIVSQYSKEFEEDFLRIMSRQFINSRVPANQVYAEYIKDRHHIHMNATEWTSLTEFVKYLGKTSKCEVEETPKGWFIRYINRDPEYVMRKVSEEKKEKAEL 163          
BLAST of CK934071 vs. ExPASy Swiss-Prot
Match: KIN17_SCHPO (KIN17-like protein OS=Schizosaccharomyces pombe GN=SPBC365.09c PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 84/165 (50.91%), Postives = 113/165 (68.48%), Query Frame = 1
Query:   10 MGRNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVD 504
            MGR E  TPKAI+N +K+KGLQ+LRWYC  CQKQ RDENGFKCH  SE H RQM +   NP + ++ +S +F   F+ L+R +H   +I     Y EYI D++HVHMN+TRW TL+EF K+LGR G C+VEE  KG+FI+YID++   + + +   KR + +  D
Sbjct:    1 MGRAEAGTPKAISNALKSKGLQRLRWYCSACQKQMRDENGFKCHTQSEGHIRQMNVIAMNPGKRIQDFSNQFLRDFISLLRTAHGEKKIHFNQFYQEYIRDKNHVHMNATRWHTLSEFCKFLGRQGMCRVEENEKGFFISYIDKNPANILRNEANKKRERQEKSD 165          
BLAST of CK934071 vs. ExPASy Swiss-Prot
Match: RTS2_YEAST (Zinc finger protein RTS2 OS=Saccharomyces cerevisiae GN=RTS2 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.303e-26
Identity = 57/114 (50.00%), Postives = 80/114 (70.18%), Query Frame = 1
Query:   64 KGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQM-QIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVE 402
            +GLQK R+YCQ+CQ+QC+D NGF+ H  S SH R++ Q+  ++  R    Y+ +FE GFL+L+++ H    I A  VYNEY+ DR HVHMN+T   +LT+FV+YLGR GK  V+
Sbjct:   17 RGLQKTRYYCQICQRQCKDANGFQSHNKSPSHLRKISQVTAEDARR----YNIQFEKGFLQLLKQRHGEKWIDANKVYNEYVQDRDHVHMNATMHRSLTQFVRYLGRAGKVDVD 126          
The following BLAST results are available for this feature:
BLAST of CK934071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KIN17_HUMAN1.849e-6163.64DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=K... [more]
KIN17_MOUSE5.381e-6163.03DNA/RNA-binding protein KIN17 OS=Mus musculus GN=K... [more]
KIN17_DICDI1.240e-5761.35KIN17-like protein OS=Dictyostelium discoideum GN=... [more]
KIN17_SCHPO5.776e-4750.91KIN17-like protein OS=Schizosaccharomyces pombe GN... [more]
RTS2_YEAST4.303e-2650.00Zinc finger protein RTS2 OS=Saccharomyces cerevisi... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_G08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934071 ID=CK934071|Name=CK934071|organism=Citrus sinensis|type=EST|length=836bp
GGGGGAGAGATGGGAAGGAACGAGTTCTTAACACCAAAGGCAATTGCTAA
CAGAATCAAAGCGAAAGGGTTACAGAAGCTACGATGGTACTGCCAGATGT
GTCAGAAGCAATGCAGAGACGAGAATGGCTTCAAATGCCACTGCATGAGC
GAAAGCCACCAGCGTCAGATGCAAATCTTCGGTCAAAACCCCGACCGAAT
CGTCGAGGGTTACTCCGAAGAATTCGAAGCCGGCTTCCTCGAACTCATGA
GGCGCAGCCACCGCTTCAGCCGCATCGCCGCCACCGTCGTTTACAACGAG
TACATCCACGACCGACACCACGTCCACATGAATTCCACCAGGTGGGCTAC
CCTGACCGAGTTTGTCAAGTACTTGGGCCGGACCGGTAAGTGCAAAGTTG
AGGAGACTCCAAAGGGTTGGTTTATTACTTATATTGATAGAGATTCAGAG
ACCCTTTTCAAGGAAAAGATGAAAAACAAGAGAATTAAGTTGGATATGGT
TGACGAAGAGAGGCGAGAGAGAGAGATTCAAAAGCAAATTGAGATTGCTG
CTTCTTCTTCCGTTTCTTCGACCAATCCCCTTTCTAATTCTGAGGATAAC
ACCACCAGGGAATTGAATTTGGAGGCTGCGGCTGCTGTAGGTAAGGTTGG
CTTTGCACTTGGGTCATCATACAAAGATAATGTTACCAGTAATGGTAGTG
GTAATAATGGTAGTAGTAGTACTAGATTGGTTTTTGAAGAGCTTGATAAG
GACAATAATAATAATAATAATAATAATAGGAAGATTGATAAAAATGGTAG
TAAAGTTAGTGGGAACTCAGCGTNNNNGGAGTTGAT
back to top