CK934088
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RK17_TOBAC (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum GN=RPL17 PE=1 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.584e-68 Identity = 128/161 (79.50%), Postives = 141/161 (87.58%), Query Frame = 3 Query: 204 RTQQAPHLFSSYMGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 + + + L S++GLA +PLLSL D TSFEH +DNG R+ AMRHGR+VPKL+RPPDQRRALLRGLTTQLLKHGRIKTT+ARA AVRKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV +RYGERNGGYTRIIRTLPRRGDNAPMAYIE Sbjct: 43 KPKSSSRLLHSFVGLAPLHPLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 203
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RK17_ARATH (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 2.987e-67 Identity = 127/151 (84.11%), Postives = 137/151 (90.73%), Query Frame = 3 Query: 234 SYMGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 S+ GL+ NPLLS+G D SFE+G VD G RI AMRHGRRVPKL+RPPDQR+ALLRGLTTQLLKHGRIKTTRARASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV +RYGERNGGYTRIIRTLPRRGDNAPMAYIE Sbjct: 59 SFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 209
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_SYNP2 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplQ PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 8.192e-41 Identity = 78/114 (68.42%), Postives = 99/114 (86.84%), Query Frame = 3 Query: 345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ARA AVR VD+MITLAKDGSL RR+ALG++Y+K +VHALFA+ ++RYG+R GGY+R++RT+ RRGDNA MA IE Sbjct: 1 MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSLAARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIE 114
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_ACAM1 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) GN=rplQ PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 8.192e-41 Identity = 82/114 (71.93%), Postives = 97/114 (85.09%), Query Frame = 3 Query: 345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 MRH RV KL +P DQR+ALLR L+TQL++HGR+ TT+ARA AVR V+KMITLAKDGSL RRQALG+IY+KQ+VHALF +V +RYG+RNGGYTRIIRT+ RRGDNA MA IE Sbjct: 1 MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSLASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIE 114
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_PROMT (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL2A) GN=rplQ PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.383e-40 Identity = 76/114 (66.67%), Postives = 97/114 (85.09%), Query Frame = 3 Query: 345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 MRH RR+P+LS P DQR+ALLRGLTTQL++ GR+ TT+ARA A+R ++MITLAKDGSL RR+A+G++Y+KQ+VHALF + QERYG+R GGYTRI+RT PRRGDN+ MA +E Sbjct: 1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVE 114
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_PROM1 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL1A) GN=rplQ PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.383e-40 Identity = 76/114 (66.67%), Postives = 97/114 (85.09%), Query Frame = 3 Query: 345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 MRH RR+P+LS P DQR+ALLRGLTTQL++ GR+ TT+ARA A+R ++MITLAKDGSL RR+A+G++Y+KQ+VHALF + QERYG+R GGYTRI+RT PRRGDN+ MA +E Sbjct: 1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVE 114
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_SYNR3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain RCC307) GN=rplQ PE=3 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 4.066e-40 Identity = 79/114 (69.30%), Postives = 97/114 (85.09%), Query Frame = 3 Query: 345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 MRH RVP+L RP DQR+A+LRGLTTQL++ GR+ TT+ARA A+R ++MI+LAKDGSL RR+ALG+IY+KQ+VHALF + ERYG+RNGGYTRIIRT+PRRGDNA MA IE Sbjct: 1 MRHQCRVPQLGRPADQRKAMLRGLTTQLIREGRVTTTKARAKALRDETERMISLAKDGSLAARRRALGYIYDKQLVHALFDKASERYGDRNGGYTRIIRTVPRRGDNAEMAIIE 114
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_TRIEI (50S ribosomal protein L17 OS=Trichodesmium erythraeum (strain IMS101) GN=rplQ PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40 Identity = 78/114 (68.42%), Postives = 96/114 (84.21%), Query Frame = 3 Query: 345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 MRH RVPKL +P DQRRALLR L TQL++HG+IKTT+ RA AV+ V++MITLAKDGSL RR+ALG++Y+K++VH+LF E QERYG RNGGYTR++RT+ RRGDNA MA IE Sbjct: 1 MRHSCRVPKLGKPTDQRRALLRSLATQLIRHGQIKTTKPRAKAVQSEVERMITLAKDGSLAARRRALGYLYDKKLVHSLFNEAQERYGSRNGGYTRVLRTIRRRGDNAEMAIIE 114
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_PROMM (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplQ PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40 Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = 3 Query: 345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 MRH RVPKL RP DQR+A+LRGLTTQL++ GR+ TT+ARA A+R ++MITLAK+GSL RR+A+G+IY+KQ+VHALF + Q+RYG+R GGYTRIIRT+PRRGDNA MA IE Sbjct: 1 MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIE 114
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_PROM3 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplQ PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40 Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = 3 Query: 345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686 MRH RVPKL RP DQR+A+LRGLTTQL++ GR+ TT+ARA A+R ++MITLAK+GSL RR+A+G+IY+KQ+VHALF + Q+RYG+R GGYTRIIRT+PRRGDNA MA IE Sbjct: 1 MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIE 114 The following BLAST results are available for this feature:
BLAST of CK934088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934088 ID=CK934088; Name=CK934088; organism=Citrus sinensis; type=EST; length=848bpback to top |