CK934088

Overview
NameCK934088
Unique NameCK934088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10649 contig Csv1_Contig10649:6..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RK17_TOBAC (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum GN=RPL17 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.584e-68
Identity = 128/161 (79.50%), Postives = 141/161 (87.58%), Query Frame = 3
Query:  204 RTQQAPHLFSSYMGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            + + +  L  S++GLA  +PLLSL   D TSFEH    +DNG R+ AMRHGR+VPKL+RPPDQRRALLRGLTTQLLKHGRIKTT+ARA AVRKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV +RYGERNGGYTRIIRTLPRRGDNAPMAYIE
Sbjct:   43 KPKSSSRLLHSFVGLAPLHPLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 203          
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RK17_ARATH (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.987e-67
Identity = 127/151 (84.11%), Postives = 137/151 (90.73%), Query Frame = 3
Query:  234 SYMGLASNNPLLSLGFSDLTSFEHGLAFVDNGCRISAMRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            S+ GL+  NPLLS+G  D  SFE+G   VD G RI AMRHGRRVPKL+RPPDQR+ALLRGLTTQLLKHGRIKTTRARASA+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEV +RYGERNGGYTRIIRTLPRRGDNAPMAYIE
Sbjct:   59 SFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIE 209          
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_SYNP2 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplQ PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.192e-41
Identity = 78/114 (68.42%), Postives = 99/114 (86.84%), Query Frame = 3
Query:  345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ARA AVR  VD+MITLAKDGSL  RR+ALG++Y+K +VHALFA+ ++RYG+R GGY+R++RT+ RRGDNA MA IE
Sbjct:    1 MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSLAARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIE 114          
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_ACAM1 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) GN=rplQ PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.192e-41
Identity = 82/114 (71.93%), Postives = 97/114 (85.09%), Query Frame = 3
Query:  345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT+ARA AVR  V+KMITLAKDGSL  RRQALG+IY+KQ+VHALF +V +RYG+RNGGYTRIIRT+ RRGDNA MA IE
Sbjct:    1 MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSLASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIE 114          
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_PROMT (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL2A) GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.383e-40
Identity = 76/114 (66.67%), Postives = 97/114 (85.09%), Query Frame = 3
Query:  345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            MRH RR+P+LS P DQR+ALLRGLTTQL++ GR+ TT+ARA A+R   ++MITLAKDGSL  RR+A+G++Y+KQ+VHALF + QERYG+R GGYTRI+RT PRRGDN+ MA +E
Sbjct:    1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVE 114          
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_PROM1 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain NATL1A) GN=rplQ PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.383e-40
Identity = 76/114 (66.67%), Postives = 97/114 (85.09%), Query Frame = 3
Query:  345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            MRH RR+P+LS P DQR+ALLRGLTTQL++ GR+ TT+ARA A+R   ++MITLAKDGSL  RR+A+G++Y+KQ+VHALF + QERYG+R GGYTRI+RT PRRGDN+ MA +E
Sbjct:    1 MRHQRRIPQLSLPADQRKALLRGLTTQLIREGRVTTTKARAKALRNETERMITLAKDGSLASRRRAIGYVYDKQLVHALFEKAQERYGDREGGYTRIVRTTPRRGDNSEMAIVE 114          
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_SYNR3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain RCC307) GN=rplQ PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.066e-40
Identity = 79/114 (69.30%), Postives = 97/114 (85.09%), Query Frame = 3
Query:  345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            MRH  RVP+L RP DQR+A+LRGLTTQL++ GR+ TT+ARA A+R   ++MI+LAKDGSL  RR+ALG+IY+KQ+VHALF +  ERYG+RNGGYTRIIRT+PRRGDNA MA IE
Sbjct:    1 MRHQCRVPQLGRPADQRKAMLRGLTTQLIREGRVTTTKARAKALRDETERMISLAKDGSLAARRRALGYIYDKQLVHALFDKASERYGDRNGGYTRIIRTVPRRGDNAEMAIIE 114          
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_TRIEI (50S ribosomal protein L17 OS=Trichodesmium erythraeum (strain IMS101) GN=rplQ PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 78/114 (68.42%), Postives = 96/114 (84.21%), Query Frame = 3
Query:  345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            MRH  RVPKL +P DQRRALLR L TQL++HG+IKTT+ RA AV+  V++MITLAKDGSL  RR+ALG++Y+K++VH+LF E QERYG RNGGYTR++RT+ RRGDNA MA IE
Sbjct:    1 MRHSCRVPKLGKPTDQRRALLRSLATQLIRHGQIKTTKPRAKAVQSEVERMITLAKDGSLAARRRALGYLYDKKLVHSLFNEAQERYGSRNGGYTRVLRTIRRRGDNAEMAIIE 114          
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_PROMM (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplQ PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = 3
Query:  345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            MRH  RVPKL RP DQR+A+LRGLTTQL++ GR+ TT+ARA A+R   ++MITLAK+GSL  RR+A+G+IY+KQ+VHALF + Q+RYG+R GGYTRIIRT+PRRGDNA MA IE
Sbjct:    1 MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIE 114          
BLAST of CK934088 vs. ExPASy Swiss-Prot
Match: RL17_PROM3 (50S ribosomal protein L17 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplQ PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.935e-40
Identity = 78/114 (68.42%), Postives = 97/114 (85.09%), Query Frame = 3
Query:  345 MRHGRRVPKLSRPPDQRRALLRGLTTQLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQERYGERNGGYTRIIRTLPRRGDNAPMAYIE 686
            MRH  RVPKL RP DQR+A+LRGLTTQL++ GR+ TT+ARA A+R   ++MITLAK+GSL  RR+A+G+IY+KQ+VHALF + Q+RYG+R GGYTRIIRT+PRRGDNA MA IE
Sbjct:    1 MRHQCRVPKLGRPTDQRKAMLRGLTTQLIREGRVTTTKARAKALRDEAERMITLAKNGSLASRRRAIGYIYDKQLVHALFDKAQDRYGDRQGGYTRIIRTVPRRGDNAEMAIIE 114          
The following BLAST results are available for this feature:
BLAST of CK934088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK17_TOBAC1.584e-6879.5050S ribosomal protein L17, chloroplastic OS=Nicoti... [more]
RK17_ARATH2.987e-6784.1150S ribosomal protein L17, chloroplastic OS=Arabid... [more]
RL17_SYNP28.192e-4168.4250S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
RL17_ACAM18.192e-4171.9350S ribosomal protein L17 OS=Acaryochloris marina ... [more]
RL17_PROMT2.383e-4066.6750S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_PROM12.383e-4066.6750S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_SYNR34.066e-4069.3050S ribosomal protein L17 OS=Synechococcus sp. (st... [more]
RL17_TRIEI6.935e-4068.4250S ribosomal protein L17 OS=Trichodesmium erythra... [more]
RL17_PROMM6.935e-4068.4250S ribosomal protein L17 OS=Prochlorococcus marin... [more]
RL17_PROM36.935e-4068.4250S ribosomal protein L17 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934088 ID=CK934088; Name=CK934088; organism=Citrus sinensis; type=EST; length=848bp
GGGGATATTCTGGTTACATAACAGCAGCTGAAGCGGCAATGGCGATTACG
TTTGCAGTAGCAACGACAACAGCAGCAGATTGTAGTAGCAATAGATGGAG
TATGCAATCCCTAAGCCCAGCTCTCCCTTCACTTAACTCCATTTCTTGTT
CTTCAATCCGATTCTCATCATCGTCTCACTGCCGCCCAAGTCTCAGTCTC
ACCCGCACCCAACAAGCACCACACCTCTTCTCATCTTACATGGGTCTCGC
TTCTAACAACCCATTACTCTCCCTCGGCTTCTCCGACCTGACAAGTTTTG
AACATGGTCTCGCTTTCGTGGATAATGGGTGTCGAATTTCTGCAATGAGG
CACGGCAGGCGAGTTCCGAAGCTCAGCAGGCCTCCTGACCAACGGCGGGC
GCTTCTCCGTGGCCTCACCACTCAATTGCTTAAGCACGGTAGGATCAAAA
CCACTAGAGCTAGGGCCAGTGCTGTGAGGAAGTATGTTGACAAGATGATT
ACGCTCGCTAAAGACGGTTCCCTTCATAAGAGGAGGCAAGCGCTTGGGTT
CATTTATGAGAAGCAGATTGTACATGCCTTGTTCGCAGAGGTTCAAGAAA
GGTATGGTGAACGGAATGGTGGATATACTAGAATTATCAGAACACTTCCT
AGGCGAGGTGATAATGCACCCATGGCCTACATTGAACTTGTCTAGGTACT
TTGTTTGTTTCTCTAATTTGTGGCTTATTTTGTATGAATGTATAAACAAT
TTGACATTTTCGTGATTGAGATGGTGCCATGCCGATGAAGGTGATGTATT
TCAGTTGTAATATGGATGTGCTTTGTTGCCAGCTTATGTTTAGTTTAA
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