CK934120

Overview
NameCK934120
Unique NameCK934120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934120_ssr69 microsatellite CK934120_ssr69:69..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.354e-32
Identity = 78/116 (67.24%), Postives = 86/116 (74.14%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN   ++   IR+++  A  + + IL+G
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKILVG 127          

HSP 2 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 3
Query:  681 SDIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            ++IRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KG  LADEYGIKFFETSA
Sbjct:  104 NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSA 160          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.354e-32
Identity = 78/116 (67.24%), Postives = 86/116 (74.14%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN   ++   IR+++  A  + + IL+G
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKILVG 127          

HSP 2 Score: 108.612 bits (270), Expect = 4.543e-23
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 3
Query:  681 SDIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            ++IRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KG  LADEYGIKFFETSA
Sbjct:  104 NNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSA 160          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.250e-30
Identity = 69/91 (75.82%), Postives = 71/91 (78.02%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            L+KLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF S
Sbjct:   15 LVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGS 105          

HSP 2 Score: 84.3445 bits (207), Expect = 9.175e-16
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 3
Query:  687 IRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            IRNWIRNIEQHASD+VNK+L+GNK DM E K+ V +S+G  LADEYGIKF ETSA
Sbjct:  106 IRNWIRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSA 159          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.837e-30
Identity = 69/91 (75.82%), Postives = 71/91 (78.02%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            LIKLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +
Sbjct:   15 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGN 105          

HSP 2 Score: 83.1889 bits (204), Expect = 2.044e-15
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 3
Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +IRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G  LADEYGIKF ETSA
Sbjct:  105 NIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSA 159          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.545e-30
Identity = 68/91 (74.73%), Postives = 72/91 (79.12%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL+YDVTD+ SF++
Sbjct:    9 LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDN 99          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 64/91 (70.33%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNS 430
            LIKLLLIGDSGVGKSCLLLR                  KIRTI++  +R+KLQ+WDTAGQERFRTITTAYYRGAMGILLVYDVTDE SFN+
Sbjct:   11 LIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNN 101          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+   ++   IR+++  A  D   +++G
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEHASADVEKMILG 120          

HSP 2 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +IRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+   ++   IR+++  A  D   +++G
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEHASADVEKMILG 120          

HSP 2 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +IRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIRNWIRNIEEHASADVEKMILGNKRDVND-KRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+   ++   IR+++  A  D   +++G
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEHASADVEKMILG 120          

HSP 2 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +IRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of CK934120 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.612e-28
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 2
Query:  158 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNSNCSLHFIIRSLDF*A*VDHSSILIG 505
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+   ++   IR+++  A  D   +++G
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFD---NIRNWIRNIEEHASADVEKMILG 120          

HSP 2 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 3
Query:  684 DIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGXXLADEYGIKFFETSA 851
            +IRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G  LA +YGIKF ETSA
Sbjct:   98 NIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSA 152          
The following BLAST results are available for this feature:
BLAST of CK934120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
RB1BV_BETVU5.354e-3267.24Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
ARA3_ARATH5.354e-3267.24Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8B_DICDI2.250e-3075.82Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB8A_DICDI3.837e-3075.82Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
YPT2_SCHPO6.545e-3074.73GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RYL1_YARLI1.612e-2870.33Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB8A_RAT1.612e-2858.62Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_PONAB1.612e-2858.62Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE1.612e-2858.62Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA1.612e-2858.62Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004541_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934120 ID=CK934120; Name=CK934120; organism=Citrus sinensis; type=EST; length=851bp
GGGGATCAGAGACGCCTCGTTCACTCCCTCCTCATTTCTCTCATCATCTC
CTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGATATAAA
TTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCTGATTA
CGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGGTAAGA
GTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTTTTATT
ACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGATGGAAA
ACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTTTCGAA
CAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCGTATAT
GATGTCACCGACGAGTCATCTTTCAACAGTAATTGCTCCCTTCATTTTAT
CATCAGAAGTTTAGATTTCTAAGCTTAGGTTGATCATTCCTCTATTTTGA
TTGGATATCTGGATCTGAATGTTTTATTTTCCACAAAATTTATACATGGC
ACTGGACATTATTTTCCATGATGCTGCAAATGTTACTGCTACCAGCATTG
TCATTTTGCCACTCCTTTAAATGGTGTTTATTCTCTTTTGTTCCAAGCTT
GTTTGAAATTTAGCTGTTAACTTCCTGTGTTCAGACATTAGGAATTGGAT
CCGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGG
GTAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAG
GGCCNNNNTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGC
A
back to top