CK934121

Overview
NameCK934121
Unique NameCK934121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934121_ssr71 microsatellite CK934121_ssr71:71..85. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1658 contig Csv1_Contig1658:1..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SRR35_HUMAN (35 kDa SR repressor protein OS=Homo sapiens GN=SRRP35 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAETRKRPEEMRQRHR 515
            SL +RN+    RPE+LR  F R+G + DVY+P D+YT  PRGFA+VQF D  +A +A +++N K   GR+I +  A   RK P +M+ + R
Sbjct:   11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKER 101          
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SF13A_MOUSE (Splicing factor, arginine/serine-rich 13A OS=Mus musculus GN=Sfrs13a PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAETRKRPEEMRQR 509
            SL VRN+  D R E+LR  F R+G + DVY+P D+YT  PRGFA+VQF D  +A +A H+++ K   GR+I +  A   RK P +M+ +
Sbjct:   11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99          
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SF13A_HUMAN (Splicing factor, arginine/serine-rich 13A OS=Homo sapiens GN=SFRS13A PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAETRKRPEEMRQR 509
            SL VRN+  D R E+LR  F R+G + DVY+P D+YT  PRGFA+VQF D  +A +A H+++ K   GR+I +  A   RK P +M+ +
Sbjct:   11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK 99          
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SFR2B_HUMAN (Splicing factor, arginine/serine-rich 2B OS=Homo sapiens GN=SFRS2B PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 61/206 (29.61%), Postives = 85/206 (41.26%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLAAETRKRPEEMRQRHRFXXXXXXXXXXXXXXXXXXXXXXXXXXXPHHPQGXXXXXXXXXXTPVPRQHEDYSISPRRRHIEHPGSP-----RGPPQERGAEYSRRSYSPG-YDDSADRRNPNGNGYGEKSGY 842
            +L V N+     P+ LR  FE++G V DVY+P++ +T  PRGFAFV+F D  +A +A+  M+G    GRE+ V +A   R+     RQ                                  P+G          +   R +   S SPRRRH      P     R   + RG+ YSR  YS   Y  S   R+P       +S Y
Sbjct:   15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQ--------------------------------GEPRGRSRGGGYGRRS---RSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRY 185          
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SFRS2_RAT (Splicing factor, arginine/serine-rich 2 OS=Rattus norvegicus GN=Sfrs2 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 470
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SFRS2_PIG (Splicing factor, arginine/serine-rich 2 OS=Sus scrofa GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 470
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SFRS2_PANTR (Splicing factor, arginine/serine-rich 2 OS=Pan troglodytes GN=SFRS2 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 470
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SFRS2_MOUSE (Splicing factor, arginine/serine-rich 2 OS=Mus musculus GN=Sfrs2 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 470
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SFRS2_HUMAN (Splicing factor, arginine/serine-rich 2 OS=Homo sapiens GN=SFRS2 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 470
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
BLAST of CK934121 vs. ExPASy Swiss-Prot
Match: SFRS2_CHICK (Splicing factor, arginine/serine-rich 2 OS=Gallus gallus GN=SFRS2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  243 SLLVRNIPLDCRPEELRAPFERFGVVRDVYLPKDYYTGEPRGFAFVQFVDPYEAAEAQHHMNGKRFAGREISVVLA 470
            SL V N+     P+ LR  FE++G V DVY+P+D YT E RGFAFV+F D  +A +A   M+G    GRE+ V +A
Sbjct:   15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90          
The following BLAST results are available for this feature:
BLAST of CK934121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SRR35_HUMAN1.103e-1645.0535 kDa SR repressor protein OS=Homo sapiens GN=SRR... [more]
SF13A_MOUSE1.882e-1646.07Splicing factor, arginine/serine-rich 13A OS=Mus m... [more]
SF13A_HUMAN1.882e-1646.07Splicing factor, arginine/serine-rich 13A OS=Homo ... [more]
SFR2B_HUMAN3.673e-1229.61Splicing factor, arginine/serine-rich 2B OS=Homo s... [more]
SFRS2_RAT3.109e-1147.37Splicing factor, arginine/serine-rich 2 OS=Rattus ... [more]
SFRS2_PIG3.109e-1147.37Splicing factor, arginine/serine-rich 2 OS=Sus scr... [more]
SFRS2_PANTR3.109e-1147.37Splicing factor, arginine/serine-rich 2 OS=Pan tro... [more]
SFRS2_MOUSE3.109e-1147.37Splicing factor, arginine/serine-rich 2 OS=Mus mus... [more]
SFRS2_HUMAN3.109e-1147.37Splicing factor, arginine/serine-rich 2 OS=Homo sa... [more]
SFRS2_CHICK3.109e-1147.37Splicing factor, arginine/serine-rich 2 OS=Gallus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934121 ID=CK934121; Name=CK934121; organism=Citrus sinensis; type=EST; length=861bp
GGGGGAGTTCAGATCTAACAAGTTAAAAATCTTCATCTTCTGAACTAACC
TAATCTAGTTGCAGAGGCTTCTCTCCTCTCCTCTCTTGTCTTTCTCGTAC
AGGCTGTGCTATGAGAAGGTACAGTCCACCATACTATAGTCCTCCGAGGA
GGGGATACGGAGGCCGAGGAAGAAGCCCTCCGAGAAGAGGATACGGTGGC
GGTGGAGGAGGCTATGGAAGACGCAAGGAACAGAATCATGGTAGCCTTTT
GGTTCGAAACATTCCGCTTGATTGCAGGCCTGAAGAACTCCGTGCTCCAT
TCGAGAGGTTTGGGGTTGTTAGGGATGTCTACCTTCCTAAGGATTACTAC
ACTGGGGAACCTCGAGGGTTTGCATTTGTGCAATTTGTGGATCCTTATGA
AGCTGCTGAAGCTCAACACCATATGAATGGGAAACGTTTTGCTGGGAGGG
AAATATCTGTAGTCCTTGCTGCAGAGACAAGGAAAAGGCCGGAGGAGATG
CGCCAAAGACATAGGTTTAGAGGAGGGTCGAGCTATGGAGGACCGCGATC
ATCTTATTATGGACGTTATCGGTCCCGCTCACTATCCCGTTCACGTTCCC
CTCATCATCCTCAAGGTTCTAGAAGCCGGTACCGCTCTAGATCTTACACT
CCTGTCCCAAGACAACACGAAGATTACTCAATTTCTCCTCGGAGAAGGCA
CATAGAACACCCAGGATCACCAAGAGGTCCTCCACAAGAGCGAGGTGCTG
AATACAGTCGTAGATCATATTCTCCTGGATATGATGATTCTGCTGATCGT
CGTAACCCAAATGGCAATGGTTATGGGGAGAAATCTGGCTATNNNNAGAC
ACAGGCTCACT
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