CK934125

Overview
NameCK934125
Unique NameCK934125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934125_ssr169 microsatellite CK934125_ssr169:169..192. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1423..1921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_CATRO (Adenosylhomocysteinase OS=Catharanthus roseus GN=SAHH PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.527e-13
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+LTK+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLTKDQADYISVPIEGPYKPAHYRY 485          
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_LUPLU (Adenosylhomocysteinase OS=Lupinus luteus GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHYRY 485          
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH2_ARATH (Adenosylhomocysteinase 2 OS=Arabidopsis thaliana GN=SAHH2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.016e-13
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+LTK+Q+DY+S+  +GPYKP+HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGARLTKLTKDQSDYVSIPVEGPYKPVHYRY 485          
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_TOBAC (Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.858e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485          
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_PETCR (Adenosylhomocysteinase OS=Petroselinum crispum GN=SAHH PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.858e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485          
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_NICSY (Adenosylhomocysteinase OS=Nicotiana sylvestris GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.858e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485          
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_MESCR (Adenosylhomocysteinase OS=Mesembryanthemum crystallinum GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.858e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485          
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_MEDSA (Adenosylhomocysteinase OS=Medicago sativa GN=SAHH PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.858e-13
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+L+K+QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGQLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485          
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_SOLLC (Adenosylhomocysteinase OS=Solanum lycopersicum GN=SAHH PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.340e-12
Identity = 34/53 (64.15%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+LTK+QADYI V  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKFGAKLTKLTKDQADYIYVPVEGPYKPAHYRY 485          
BLAST of CK934125 vs. ExPASy Swiss-Prot
Match: SAHH_PHASS (Adenosylhomocysteinase OS=Phalaenopsis sp. GN=SAHH PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.286e-12
Identity = 34/53 (64.15%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    4 EKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 162
            EKKVYVLPKHLDEKV            T+LT  QADYISV  +GPYKP HYRY
Sbjct:  433 EKKVYVLPKHLDEKVAALHLGKLGAKLTKLTPSQADYISVPVEGPYKPAHYRY 485          
The following BLAST results are available for this feature:
BLAST of CK934125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SAHH_CATRO3.527e-1366.04Adenosylhomocysteinase OS=Catharanthus roseus GN=S... [more]
SAHH_LUPLU6.016e-1364.15Adenosylhomocysteinase OS=Lupinus luteus GN=SAHH P... [more]
SAHH2_ARATH6.016e-1360.38Adenosylhomocysteinase 2 OS=Arabidopsis thaliana G... [more]
SAHH_TOBAC7.858e-1364.15Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAH... [more]
SAHH_PETCR7.858e-1364.15Adenosylhomocysteinase OS=Petroselinum crispum GN=... [more]
SAHH_NICSY7.858e-1364.15Adenosylhomocysteinase OS=Nicotiana sylvestris GN=... [more]
SAHH_MESCR7.858e-1364.15Adenosylhomocysteinase OS=Mesembryanthemum crystal... [more]
SAHH_MEDSA7.858e-1364.15Adenosylhomocysteinase OS=Medicago sativa GN=SAHH ... [more]
SAHH_SOLLC1.340e-1264.15Adenosylhomocysteinase OS=Solanum lycopersicum GN=... [more]
SAHH_PHASS2.286e-1264.15Adenosylhomocysteinase OS=Phalaenopsis sp. GN=SAHH... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004541_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IIIF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934125 ID=CK934125; Name=CK934125; organism=Citrus sinensis; type=EST; length=505bp
GGGGAGAAGAAGGTGTACGTTCTGCCCAAGCACCTCGATGAAAAGGTTGC
TGCTCTTCACCTTGGCAAACTTGGAGCTAAGCTCACCAGGCTCACCAAGG
AGCAGGCTGACTACATCAGTGTGTCCGCCGATGGTCCTTACAAGCCTCTT
CACTACAGGTACTAAGTGGAAGAAGAAGAAGAAGAAGAAGAAGAGTGAAT
GTTTTGAGGGAAAGAAACAAAATATTTGGCCGGCTTGATTGTTTTCAATG
ATGATCTGTAGTAGGATGTTAGGTTTAAATTTCGTAGTAGTGTGTGTTTG
GGTGGTGGGAAAGTTGGAGGAAAGAAACGGATTTGTTTCCGTTGATTGAA
GACCATTTGGGATTTGAATAAGGTTTTGGATGGGGCCGTGTTGGATTATT
TTGTATTTGGTGCAGTTTTAAGTTTTGCTTGCTTTGCTGCATCTTGTTAT
CCTTATTGTTTACTGATGAATGATTATAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
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