CK934140

Overview
NameCK934140
Unique NameCK934140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13375 contig Csv1_Contig13375:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934140 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 58/107 (54.21%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  123 MAKSF-AIFILALFAISMLQTMAVAANGQGGRHYDSKHYGPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 440
            MAKS+ AIF+L L  + MLQTM +A++G   + +  K YGPG++K  QCP +CD RC +TQY K               VPPGYYGNK VC CYNNWKT+EGGPKCP
Sbjct:    1 MAKSYGAIFLLTLIVLFMLQTMVMASSGSNVK-WSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CK934140 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 44/112 (39.29%), Postives = 55/112 (49.11%), Query Frame = 3
Query:  123 MAKSFAIFILALFAISMLQTMAVAAN----GQGGRHYDSKHYG--PGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 440
            MA   +I +  L  + + Q     AN     Q  +  +++ YG   G +    C  KC  RCS+T Y+KP              VP G YGNK  CPCYNNWKTK GGPKCP
Sbjct:    1 MAGKMSIVLFVLLVVFLTQNQVSRANIMRDEQQQQQRNNQLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CK934140 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 31/68 (45.59%), Postives = 37/68 (54.41%), Query Frame = 3
Query:  237 GPGTVKSYQCPGKCDTRCSQTQYRKPXXXXXXXXXXXXXXVPPGYYGNKAVCPCYNNWKTKEGGPKCP 440
            G   ++   C  +C  RCS T ++KP              VP G YGNK  CPCYNNWKT+EG PKCP
Sbjct:   29 GYNKLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
The following BLAST results are available for this feature:
BLAST of CK934140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GASA4_ARATH3.881e-2854.21Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
GAST1_SOLLC4.450e-1639.29Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC1.340e-1245.59Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004540_H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934140 ID=CK934140; Name=CK934140; organism=Citrus sinensis; type=EST; length=755bp
GGGGAAGCAAAACCAACCCCTCTTCAGTCTTTACAATTTCTTGTTTCTCT
CTTGTGCTTGTTTCGAGTCCTGTTCCACTTTAAGAGGGGTTTGTTTGTTA
ATTTGTAGCAAGTTTAAGGGCCATGGCTAAATCGTTTGCCATCTTCATCT
TGGCTCTCTTTGCCATCTCCATGCTTCAAACAATGGCCGTGGCAGCAAAT
GGGCAGGGAGGTCGGCACTATGATTCGAAACATTACGGACCTGGGACTGT
CAAAAGCTACCAATGCCCTGGAAAATGTGATACGAGATGCAGCCAGACCC
AATACCGCAAGCCATGCCTATTCTTTTGCAACAAGTGCTGCAAGAAGTGT
CTGTGTGTGCCCCCTGGCTACTATGGCAACAAGGCTGTGTGCCCTTGCTA
CAACAATTGGAAGACCAAGGAAGGAGGACCTAAATGCCCTTAAGCATGCA
GCTCTTCGCTTTCAAAATCTCTTCCTCTTTATCGTCACCTATTTTAAGTC
TCGTTTTGTTGTATTATCATCGCAGCCACTGTGATGCTATTCTACTATTA
CTTACTAACTTCAAAATTCAATACGCACCGGCCAGCCCCTTTTTCCTATA
TGTGGGGGTTTCTTTTGATGTGAGTCACTCCTTGAGGATTAAGGATTAAC
CTCCTCTAAATGAGAGTGGCTAATCTATGATGTATTATCATATTATAATG
TCAATGAAGTTTCTTATTTACGACTAANAAAAAAAAAAAAAGAAAAAAAA
AAAAA
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