CK934151

Overview
NameCK934151
Unique NameCK934151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8154 contig Csv1_Contig8154:297..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 5.120e-87
Identity = 152/173 (87.86%), Postives = 164/173 (94.80%), Query Frame = 3
Query:    3 YGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIDYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            YGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVI YIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEI+HARL
Sbjct:   76 YGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARL 248          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 2.151e-85
Identity = 150/173 (86.71%), Postives = 162/173 (93.64%), Query Frame = 3
Query:    3 YGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIDYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            YGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVI YIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEI+HARL
Sbjct:   73 YGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARL 245          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 4.642e-80
Identity = 143/172 (83.14%), Postives = 157/172 (91.28%), Query Frame = 3
Query:    6 GFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIDYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+ YIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK  TL+LAEI+H+RL
Sbjct:   78 GFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRL 248          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 3.587e-48
Identity = 103/175 (58.86%), Postives = 124/175 (70.86%), Query Frame = 3
Query:    6 GFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIDYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIRHARL 521
            GFDP GL KP+E++    D  DQN AKN  G +        D  S+   L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWIEV+++   EF RNSE +PEKR YPGG  FDPL LA++ E++A  L+ AEI+HARL
Sbjct:   72 GFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARL 244          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.203e-19
Identity = 54/119 (45.38%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  174 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIDYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG  FDPLG + DP K   L++ EI++ RL
Sbjct:   81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPAKFEELKVKEIKNGRL 198          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.268e-18
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  129 DMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIDYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            D    PL   T     +RF+E E+ H RWAML   G L  E L    W  A +   L +G ++YLG P+P+ ++ T++ IE L I + E QR  E DPEK+ YPGG  FDPLG + DP K   L+L EI++ RL
Sbjct:   65 DFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRL 197          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.797e-15
Identity = 56/148 (37.84%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  174 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIDYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIRHARL 521
            L+ +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L++ ++E +R  +  DP+ +                       YPGGKFFDPL LA          D +K   L+LAEI+HARL
Sbjct:   98 LKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARL 237          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 62/205 (30.24%), Postives = 85/205 (41.46%), Query Frame = 3
Query:    3 YGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIDYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIRHARL 521
            YGFDP GLGK   +L++                                           +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+  +++++ ++E +R  +  DP+ +                       YPGGKFFDPL LA          D EK   L++AEI+HARL
Sbjct:   79 YGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARL 232          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 59/184 (32.07%), Postives = 85/184 (46.20%), Query Frame = 3
Query:    3 YGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIDYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            YG+DPFGLGK  E           N AK                                ++  ELIH RWAML   G +  E L            W   G + L++G++  Y G+ +P ++   +  EV+++   E+ R  + LD E +L+PGG F DPLGLA DPE+ A L++ EI++ RL
Sbjct:   93 YGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRL 231          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 52/148 (35.14%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  174 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIDYIEFQR--------NSELD---------------PEKRLYPGGKFFDPLGLAA---------DPEKKATLQLAEIRHARL 521
            L+ +RE ELIHGRWAM A LG    +  +GI W +AG           G   PFS  +L+  ++L++ ++E +R        +  +D                 ++ YPGGKFFDPL LA          D EK   L+LAEI+H+RL
Sbjct:   93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRL 232          
The following BLAST results are available for this feature:
BLAST of CK934151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CB4A_ARATH5.120e-8787.86Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH2.151e-8586.71Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH4.642e-8083.14Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE3.587e-4858.86Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC1.203e-1945.38Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU2.268e-1843.28Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB4_SPIOL1.797e-1537.84Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC1.521e-1430.24Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB26_ARATH2.197e-1332.07Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB4B_SOLLC3.747e-1335.14Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934151 ID=CK934151; Name=CK934151; organism=Citrus sinensis; type=EST; length=522bp
ACTACGGGTTCGACCCGTTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAG
TATGACTATGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGA
TATTATTGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCACTTC
AGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTC
ATTCATGGACGTTGGGCCATGTTGGCTACTCTCGGTGCCCTCACTGTTGA
GTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTG
AAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTG
ATATGGATTGAGGTTTTGGTAATTGACTACATTGAGTTCCAAAGAAACTC
AGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATC
CTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCA
GAGATCAGGCACGCCCGCCTTG
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