CK934162

Overview
NameCK934162
Unique NameCK934162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934162_ssr415 microsatellite CK934162_ssr415:415..429. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:1..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.865e-35
Identity = 69/85 (81.18%), Postives = 79/85 (92.94%), Query Frame = 3
Query:   78 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            MASGDVE+RCFVGGLAWAT D +L  AF  YGD+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.209e-34
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = 3
Query:   78 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            MAS DVE+RCFVGGLAWAT D +L  AF  YG++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.518e-34
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   90 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            +VE+RCFVGGLAWAT D SL +AF  +GDI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.337e-33
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 3
Query:   78 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            MAS DVE+RCFVGGLAWAT + SL  AF  +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.640e-31
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 3
Query:   78 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            MA+ DVE+RCFVGGLAWAT++ SL  AF +YG+IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.082e-30
Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 3
Query:   90 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            DVE+RCFVGGL WAT D SL  AF  YGD+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:    3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.257e-30
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 3
Query:   90 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            +VE+RCFVGGLAWAT D  L   F  +GD+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.866e-30
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 3
Query:   90 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            +VE+RCFVGGLAWAT D+ L   F  +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.171e-29
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 3
Query:   78 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            MA+ DVE+RCFVGGLAWAT + +L +AF  +G +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  141 SSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            +SLH AF  YG++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of CK934162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
GRP7_ARATH1.865e-3581.18Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP1_SINAL1.209e-3481.18Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA3.518e-3483.95Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SINAL1.337e-3378.82Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE3.640e-3174.12Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU3.082e-3075.31Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH5.257e-3074.07Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA6.866e-3072.84Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SORBI1.171e-2969.41Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI4.460e-2176.56Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934162 ID=CK934162; Name=CK934162; organism=Citrus sinensis; type=EST; length=744bp
GGGGGATTCCGCAGCGGTGCTGTCTCTAAGATTTTTCTTGTAATTTTTTC
TTAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGGCGATGTCGAGTT
TAGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCC
ATGAGGCCTTCGGTGCTTACGGCGATATCCTTGAATCGAAGATAATTAAT
GATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGA
TGAGAAGTCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAATCTCG
ACGGCCGTAACATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGGC
GGTGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTGG
TGGACGCCGTGAAAGTGGTGGTGGTGGTGGATACGGTGGGAGCCGCGGAT
ACGGAGGTGGCGGTGGTGGAGGATATGGTGGCCGCCGTGAAGGTGGTTAC
AGCCGTGATGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAG
CGGTGCTTCTGATGGCGGCAGCTGGAGGAATTAGTGTTGTTTAGGATAAA
TTAGGAGCTATGTTATGGTTTCGTGTTTTGATATTTTCCTTGGGTTATGT
TGTGTCGTTTTGATCGGTTCCTGTNNNNNTGTGTTGTTTCGATCTCCCTG
TTTGGTTAANTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAANN
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