CK934169

Overview
NameCK934169
Unique NameCK934169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934169_ssr77 microsatellite CK934169_ssr77:77..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1957 contig Csv1_Contig1957:1..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.918e-54
Identity = 103/113 (91.15%), Postives = 109/113 (96.46%), Query Frame = 2
Query:  218 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            MSEFD  IP+AFDPFAEANAEDSGAG+KDYVH+RVQQRNGRKSLTTVQGLKK++SYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKE IKIH F
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 103/115 (89.57%), Postives = 107/115 (93.04%), Query Frame = 2
Query:  218 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKE IKIH F
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.601e-52
Identity = 103/115 (89.57%), Postives = 107/115 (93.04%), Query Frame = 2
Query:  218 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKE IKIH F
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.567e-52
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 2
Query:  218 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            MS+ D QIP+AFDPF+EANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKE IKIH F
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 3.567e-52
Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 2
Query:  218 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            MSE D+Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ IKIH F
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.084e-52
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 2
Query:  218 MSEFDTQIPSAFDPFAEANAEDSGA--GSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            MS+ D QIP+AFDPFAEANA DSGA  GSKDYVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKE IKIH F
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.038e-51
Identity = 98/113 (86.73%), Postives = 108/113 (95.58%), Query Frame = 2
Query:  218 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            MSE D+Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I+IH F
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.312e-51
Identity = 97/113 (85.84%), Postives = 108/113 (95.58%), Query Frame = 2
Query:  218 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            MS+ + Q+P+AFDPFA+ANAEDSGAG+K+YVHIRVQQRNGRKSLTTVQGLKKE+SY+KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ IKIH F
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.358e-43
Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 2
Query:  218 MSEFDTQIPSAFDPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            M + D QIP++FDPFAEA   D+   +K+YVHIR+QQRNGRKSLTTVQGLKKE SY+KILKDLKK  CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H+F
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.920e-31
Identity = 61/105 (58.10%), Postives = 83/105 (79.05%), Query Frame = 2
Query:  248 AFDPFAEANAEDS--GAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            +FDPFA+A   D    AG++DY+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+H F
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CK934169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SALBA2.918e-5491.15Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_ORYSJ1.601e-5289.57Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI1.601e-5289.57Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_SPOST3.567e-5288.70Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI11_ARATH3.567e-5287.61Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_MAIZE6.084e-5288.70Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_BRAOL1.038e-5186.73Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI12_ARATH2.312e-5185.84Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI1_PIMBR1.358e-4375.22Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG5.920e-3158.10Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934169 ID=CK934169; Name=CK934169; organism=Citrus sinensis; type=EST; length=852bp
GGGGGTTGTGTGGTCAAGAGAAGCCCGTCTGCACTTATATAACGACATTA
TAACCCAAACACAATCCTTATCTCTGTCTCTCTCTCGCTTCTCTTGTTTC
CGCTCTCGTAAGGCAGTTTGATTCGCAATCTTCCTCTTAAGCTAAGAGCA
ATTTAAGTGAATTGAAGCCAATTTCTTGCTGGTTACGGACTCTTTGACAC
TCCAACAACCAAGTTTCATGTCTGAATTTGACACCCAGATTCCATCTGCC
TTTGATCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGTTCAAA
AGATTATGTGCATATTCGCGTGCAGCAACGTAACGGGAGGAAAAGCCTGA
CAACTGTGCAAGGGTTGAAGAAAGAATTCAGCTACAACAAGATTCTCAAG
GACCTCAAGAAAGAGTTCTGCTGTAATGGTACTGTTGTACAGGACCCTGA
GTTAGGCCAGGTCATACAGCTTCAGGGTGACCAGAGGAAGAATGTGTCCA
CCTTCCTCGTTCAGGCTGGTATTGTGAAGAAGGAATTCATCAAAATTCAT
AGTTTCTAAATAGTGGGAGCCAAGTTGCTATATGTTGTTTATCCATCTCC
AACTATTGGTAGCAAGAAGTATATGATCTATATATTAATTTATTATCGAC
TGTCGTGTAATGTAACGCTGTCCAAACAAAAAGTTTGATGCAAGCTTGCT
TGTGCGTTTAAACTTTTTAGTTTGTAGTAGTGTTCTTTTGTTTGGGAATA
TTATGGTTTCTTCCAAGACTTATTTTAAGCAAAATAAAATGTATTCCTGC
TTTCAATTCATATGAATAGTTGTTTGTTCCAAAAAAAAAAAAAAAAAAAA
AA
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