CK934176

Overview
NameCK934176
Unique NameCK934176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1662 contig Csv1_Contig1662:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934176 vs. ExPASy Swiss-Prot
Match: Y2179_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = 3 
Query:   93 IKFKLAIVLSLCLIVDLARATDVKN-CDKNADYDVKVRGVDISPYPVARGREATFSISATTDKAISGGKLVIDVSYF---GWHIHSETH-DLCDETSCPVSTGDFVVAHSQVLPGFTPPGTYSLKMKMYDATKKQELTCITF 503
            IK  L ++++  LI  L    D+ N CD N +   K+  + + P P   G+E T S+  + ++ I+ G  + +V++F   GW      H D+C   SCPVS G F  + S  +P FTP G Y  ++ + D + +  +TC+TF
Sbjct:    2 IKTILLLLINFMLI--LIVNGDIWNYCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSLNEQITSGSSIFNVAFFINGGWRQLPTFHNDICKVLSCPVSAGPFTYSTSIKVPIFTPHGQYKGQLTLTDQSNR-NVTCLTF 140
The following BLAST results are available for this feature:
BLAST of CK934176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2179_DICDI7.257e-1232.39Putative phosphatidylglycerol/phosphatidylinositol... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004540_E04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934176 ID=CK934176; Name=CK934176; organism=Citrus sinensis; type=EST; length=685bp
GGGGGTATGCTAGCTCTCCCAAANNNTATCCCCAAAAATTTAAATCATTC
ACTAAAATTTTGTAATTTTTTTAAGAATCAATCATGGCGACGATCAAGTT
CAAGCTTGCCATTGTGCTATCGCTTTGCTTGATTGTAGATTTGGCCCGAG
CTACCGATGTTAAGAACTGCGATAAGAATGCTGATTATGATGTGAAGGTT
CGTGGAGTTGACATATCCCCTTATCCAGTGGCAAGAGGAAGGGAGGCTAC
CTTCAGCATCTCTGCTACTACAGATAAAGCAATCTCCGGAGGAAAACTGG
TGATTGATGTTTCCTACTTTGGGTGGCACATTCACAGTGAGACACATGAT
CTTTGTGATGAGACATCCTGCCCTGTGTCAACTGGTGATTTTGTGGTTGC
TCACTCTCAAGTTTTACCTGGATTCACTCCTCCTGGTACCTACTCTCTGA
AGATGAAAATGTATGATGCAACCAAGAAGCAAGAGCTAACATGCATTACC
TTTGACTTCTCCATTGGATTTGCAAGTTCCGTGGCTGATAGTTAAGAGCT
TTGAAGATGCCTTCGGTTTACCTTTCTGCCATATAAATTTGATGTAAAGG
AAAATACTCTTTAAAATTAGTTGTTGTATCTACCTTCAGTATTGCTGGCG
TTATGAAAAATTTCTCTTCTCCTCCGAAAAAAAAA
back to top