CK934181

Overview
NameCK934181
Unique NameCK934181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934181_ssr663 microsatellite CK934181_ssr663:663..674. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934181 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.896e-44
Identity = 92/181 (50.83%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  258 KREIEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGGVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVGLIPVAMKSPLHSRKRAIELLLKGDHTI------FEEEELVNIPVPQLSKDGTEKKEYPIDXSLPDINNGVYGT 779
            K  +EE+G + +D    WYGRR+GSKKMGFEERTP+MIAA+FG   V+ Y+I TG V+VNR+CGSDG TALHCAV+G + +S E+V LLL  SA+ +  D YGNKP  +I   +     +R + +E LLKG+  +       E E  V + V      G+E+KEYP+D +LPDI NGVYGT
Sbjct:   27 KSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNEVNGQEESEPEVEVEVEVSPPRGSERKEYPVDPTLPDIKNGVYGT 207          
BLAST of CK934181 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.699e-42
Identity = 92/176 (52.27%), Postives = 119/176 (67.61%), Query Frame = 3
Query:  258 KREIEEK-GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGGVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVGLIPVAMKSPLHSRKRAIELLLKGDH-TIFEEEELVNIPVPQLSKDGTEKKEYPIDXSLPDINNGVYGT 779
            KREIEE    ++DE  FWY RR+GSKKMGFEERTP+M+AAM+G + VL Y+I TG+ +VNR C  +  TALHCAV+G + S  E++K+LL ASA  NCVD  GNKPV L+    +   +  ++A+E+LL G H ++ EEEE       +L    T   +YP D SLPDIN GVYGT
Sbjct:   46 KREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEE------EELKSVVT---KYPADASLPDINEGVYGT 212          
BLAST of CK934181 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.438e-41
Identity = 87/174 (50.00%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  258 KREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGGVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVGLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDXSLPDINNGVYGT 779
            KRE+EEKG D+DE   WY RR+GSKKMG EERTP+M+AAM+G + VL +++ TGK +VNRACG +  T LHCAVAG + +  EV+ +LL ASA VN VD  GN+P+ +     +     R++A+ELLL+G       +E V   +  +SK       YP D SLPDIN GVYG+
Sbjct:   43 KREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVSK-------YPADASLPDINEGVYGS 209          
BLAST of CK934181 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 78/202 (38.61%), Postives = 106/202 (52.48%), Query Frame = 3
Query:  255 LKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGGVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVGLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL---VNIP------------------------VPQLSKDGTEKKEYPIDXSLPDINNGVYGT 779
            ++  IE     VDE   WYGR+ GSK M  + RTP+M+AA +G + V+K ++     +VNRACG+D  TALHCA +GGA ++ +VVKLLL+A AD+N +D  G +   +I V  K  L   K  ++ LL  D +   E  L    N+P                         P   K    KKEYP+D SLPDI N +Y T
Sbjct:   60 VRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK--LEGVKLMLQELLSADGSSTAERNLRVVTNVPNRSSSPCHSPTGENGGSGSGSPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYAT 259          
BLAST of CK934181 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.229e-26
Identity = 68/194 (35.05%), Postives = 106/194 (54.64%), Query Frame = 3
Query:  288 VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGGVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVGLIPVAMKSPLHSRKRAIELLLKGDHTIFEE---------------------------EELVNIPVPQLSKDGT---EKKEYPIDXSLPDINNGVYGT 779
            +++   WY R+   ++M  E+RTP+M+A+++G + V+K+++   +  +N +CG D  TALHCA +G + +S +VVKLLLS  AD N  D +GN+PV ++ V+  +P    +  +E +LK D  I E+                            + V+ P      D T   EKKEYPID SLPDI +G+Y T
Sbjct:   64 INQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEIISEDLHASSSSLGSSFRSLSSSPDNGSSLLSLDSVSSPTKPHGTDVTFASEKKEYPIDPSLPDIKSGIYST 255          
BLAST of CK934181 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.464e-26
Identity = 74/192 (38.54%), Postives = 99/192 (51.56%), Query Frame = 3
Query:  291 DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGGVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVGLIPVAMKSPLHSRKRAIELLL---KGDHTIF-------------------EEEELVNIPVPQLSKDG-------TEKKEYPIDXSLPDINNGVYGT 779
            DE   WYGRR        E RTP+M+AA +G +AVL+ ++    V+VNR CGSDG TALHCA +GG+ S  E VKLLL+A AD +  D  G +P  +I V  K  +   K A++ LL   K  H +                    E+    +  V   +K         +EKKEYP+D SLPDI N +Y +
Sbjct:   95 DEAGLWYGRR-----KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK--MFDAKIALQDLLGCPKAGHGVLRVVTRAANSMLSPVSSPTAEDARSPSAAVMMTTKFADLPRVVTSEKKEYPVDPSLPDIKNSIYAS 279          

HSP 2 Score: 21.1718 bits (43), Expect = 7.464e-26
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 1
Query:  220 LLELSASDDISALREK*KR 276
            LLEL+A DD   LR   +R
Sbjct:   70 LLELAADDDAEGLRRALER 88          
BLAST of CK934181 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.195e-22
Identity = 59/176 (33.52%), Postives = 88/176 (50.00%), Query Frame = 3
Query:  255 LKREIEEKGFDVDEPSFWYGRRI-GSKKMGFEERTPIMIAAMFGGVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVGLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDXSLPDINNGVYGT 779
            ++R +EE+   +     WYG    G  ++G E RT  M+AA++G   VL YV+        RA  +DG T LH A AGGA ++    +LLL+A A V+ +   G +   L+P A      + ++AI LLLK            +   P        KKEYP D +LPD+ +G++ T
Sbjct:   40 VRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRAT-----AAEKAIRLLLKSPAVSPSSSPKKSASPPSPPPPQEAKKEYPPDLTLPDLKSGLFST 210          

HSP 2 Score: 28.8758 bits (63), Expect = 1.195e-22
Identity = 13/29 (44.83%), Postives = 22/29 (75.86%), Query Frame = 1
Query:  175 LPKLKDGALYNKSSILLELSASDDISALR 261
            LP+ +  A    +S+LLEL+A+DD++A+R
Sbjct:   13 LPQQQKEATVMAASLLLELAAADDVAAVR 41          
BLAST of CK934181 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.378e-19
Identity = 66/192 (34.38%), Postives = 90/192 (46.88%), Query Frame = 3
Query:  270 EEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGGVAVLKYVIETGK-VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVGLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN-IPVPQLSKDGTE--------------------KKEYPIDXSLPDINNGVYGT 779
            EE     D    WYGR        +E RTP+M+AA +G   V+  ++  G  V+VNR  G+DG TALHCA +GG+ ++  VVKLLL+A AD    D  G  P  +I     SP       +E+LL     +     + +    P LS    E                    KKEYP+D +LPDI + VY +
Sbjct:   48 EEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP--DALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDEGNRSPSSRSSSLSPITVDRGKKEYPVDPTLPDIKSSVYAS 232          

HSP 2 Score: 23.8682 bits (50), Expect = 5.378e-19
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  193 GALYNKSSILLELSASDDISALR 261
            G   ++ + LLEL+A+DD+  LR
Sbjct:   18 GGRRDRLAALLELAAADDVDGLR 40          
BLAST of CK934181 vs. ExPASy Swiss-Prot
Match: C3H67_ORYSJ (Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 3
Query:  291 DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGGVAVLKYVIETGK-VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVGLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDXSLPDINNGVYGT 779
            DEP+ WY     +   G E  TP+M+AA++G V  L  ++     V+ NRA  S   T LH A AGG+ S+   V  LL+A AD   +D                  H ++RA +L+    +++  +  L+++           +KE+P D SLPDI NG Y +
Sbjct:   39 DEPAPWY-----TPARGAEPLTPLMVAAVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPALLD------------------HLQRRASDLVALPPNSLPLKNHLLSLL--------GARKEWPPDPSLPDIKNGAYAS 171          
The following BLAST results are available for this feature:
BLAST of CK934181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
C3H66_ARATH6.896e-4450.83Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H29_ARATH1.699e-4252.27Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH1.438e-4150.00Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H30_ARATH6.266e-2938.61Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H56_ARATH2.229e-2635.05Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H24_ORYSJ7.464e-2638.54Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H33_ORYSJ1.195e-2233.52Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H50_ORYSJ5.378e-1934.38Zinc finger CCCH domain-containing protein 50 OS=O... [more]
C3H67_ORYSJ7.696e-1131.71Zinc finger CCCH domain-containing protein 67 OS=O... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004540_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934181 ID=CK934181; Name=CK934181; organism=Citrus sinensis; type=EST; length=781bp
GGGGCACTTCACACAAGTCATTTCTCAAAAGCTGAGTCTTTTTGTTCCTC
TTCTTCTATAAAATTAACACTCTTAAAGAATCAAAGAATCTTATCAACTT
ATCAAGCTCTACTCATAGGAATTGGGTATTCAAATAGTAAATTCTGCAGC
TCAAATTTCCTCATGGAAGGTGGACTCCCCAAGCTAAAAGATGGTGCCTT
GTATAACAAATCCTCAATTTTGCTGGAATTGTCAGCTTCTGACGATATCT
CTGCCTTAAGAGAGAAATAGAAGAGAAGGGTTTTGATGTTGATGAGCCCA
GCTTCTGGTATGGTAGGAGAATTGGATCAAAAAAGATGGGATTTGAAGAG
AGGACCCCAATCATGATTGCTGCCATGTTTGGAGGTGTTGCGGTATTGAA
ATATGTTATTGAAACAGGCAAAGTTAATGTGAATAGGGCCTGTGGTTCTG
ATGGTTTCACTGCCCTTCACTGTGCTGTTGCTGGTGGTGCCAACTCTTCC
TTTGAGGTGGTCAAGCTCTTACTCAGTGCATCTGCTGATGTTAACTGTGT
TGATGTGTATGGGAATAAGCCAGTTGGTCTCATTCCAGTTGCTATGAAAT
CACCACTCCATTCAAGAAAAAGGGCAATAGAGTTATTGTTGAAAGGCGAT
CATACTATTTTTGAAGAAGAAGAATTGGTGAATATTCCTGTGCCTCAGTT
ATCAAAAGATGGAACTGAGAAGAAAGAGTACCCAATTGATNTATCATTGC
CTGATATAAACAATGGAGTTTATGGAACTGA
back to top