CK934182

Overview
NameCK934182
Unique NameCK934182
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934182_ssr37 microsatellite CK934182_ssr37:37..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CK934182 vs. ExPASy Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.090e-50
Identity = 124/226 (54.87%), Postives = 149/226 (65.93%), Query Frame = 1 
Query:  175 MGNTIGGRRK-AKVMKIDGETIKLKTPIQASEVVKDYPGYVLLDSEAVKHFGIRAKPLEPRQQLKPKKVYFLVELPKLPDEEKIT--------RRVRSGIQMSAKDRLECLMLSRRAVSDLTAVNVRSSHGSEVAPGPGTGQMRVKMRLPRAQVEKLMEESANDGE-VAEKIVDLYVEKSXXXXXRCYSGELRPEEEWEAGQGGV--RR-----DFKARENKRVSF 801
            MGN+I  +RK AKVMKIDGET ++KTP+ A EV  DYPGYVLLDS+AVKHFG+R+KPLEP Q LKPKK YFLVELPKLP E            RRV SGI + AK+RL+ LMLSRR VSD+T    RS  G    P  G G   V++RLPR+Q+ KLMEE+ ND   +AEKI+ +Y+E+         SGEL        G+GGV  RR     + KARE K+VSF
Sbjct:    1 MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEPNQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSDVTI--GRSDGGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILGIYMER---------SGEL------GGGRGGVDGRRELGSGEIKARE-KQVSF 208
The following BLAST results are available for this feature:
BLAST of CK934182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1648_ARATH4.090e-5054.87Uncharacterized protein At1g66480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004540_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934182 ID=CK934182; Name=CK934182; organism=Citrus sinensis; type=EST; length=814bp
GGGGGAACAGAAGAGAGTTACCGTTCCCACTTGTGTAATCAATCAATCAA
TCATAGCCTTCAATCACACAAGAATCCCAAAGAATTTCCTCAGATTCACA
CCTCACGAAATTTACATTTAAATTGCAAATCATAATTAACAAGCTCCAAC
GCATTCAAAATAAAGTATTAAGATATGGGGAACACAATAGGTGGAAGAAG
GAAAGCAAAAGTGATGAAGATTGATGGAGAAACAATAAAATTAAAGACTC
CAATTCAGGCTAGTGAAGTTGTTAAAGACTACCCAGGTTATGTTCTATTG
GATTCAGAAGCTGTGAAGCATTTTGGCATTAGGGCAAAACCCTTGGAGCC
ACGGCAACAACTTAAGCCCAAGAAAGTATACTTCTTGGTGGAGCTGCCCA
AGCTTCCTGATGAGGAAAAGATCACGAGAAGAGTGCGTTCTGGGATTCAG
ATGAGCGCTAAGGATAGGCTCGAGTGCTTGATGCTGTCAAGGAGGGCGGT
TTCGGATCTTACTGCGGTTAATGTAAGGTCGAGCCACGGCAGTGAGGTGG
CACCGGGACCGGGGACGGGTCAGATGAGGGTCAAAATGAGGCTGCCTAGG
GCTCAAGTTGAGAAGTTGATGGAAGAGAGTGCAAATGATGGAGAGGTGGC
TGAAAAGATTGTTGATCTTTATGTGGAAAAATCCGGTGGCGGCGGCGGAC
GTTGCTACAGTGGTGAGCTTCGGCCGGAGGAGGAATGGGAGGCGGGTCAA
GGTGGCGTAAGAAGAGATTTTAAGGCGCGTGAGAATAAGCGAGTAAGTTT
TGTCCCCTCAGAAG
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