CK934183

Overview
NameCK934183
Unique NameCK934183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length223
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:588..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934183 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.173e-16
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 3 
Query:    3 TLPPRLTKGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQG 221
            TL  RL +G  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM G
Sbjct:  168 TLKQRLMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAG 238
[Close]
BLAST of CK934183 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.414e-16
Identity = 43/69 (62.32%), Postives = 48/69 (69.57%), Query Frame = 3 
Query:   24 KGYQVNTLQLNPSAEDCGYGLK-PAQPQGDSFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQG 221
            +GYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM G
Sbjct:  176 EGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGG 244
The following BLAST results are available for this feature:
BLAST of CK934183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AGL9_PETHY1.173e-1661.64Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA3.414e-1662.32MADS-box transcription factor 1 OS=Pisum sativum G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004540_D03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934183 ID=CK934183; Name=CK934183; organism=Citrus sinensis; type=EST; length=223bp
AAACCCTCCCCCCCAGGTTGACGAAGGGATACCAAGTGAACACACTTCAA
TTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACC
TCAGGGCGATAGCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAA
TTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGT
CTGAATAATTACATGCAAGGATG
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