CK934188

Overview
NameCK934188
Unique NameCK934188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:242..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.430e-30
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPELRHYAPGVPIILVGTKLDLRDDK FLADHPGAVPITTAQGEELRKLIGAP YIECSSKTQ
Sbjct:  100 WIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.211e-29
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEELRKLIGAP YIECSSKTQ
Sbjct:  100 WIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.697e-29
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEEL+KLIGAP YIECSSKTQ
Sbjct:  100 WIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.600e-29
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ
Sbjct:  100 WIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.600e-29
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITT QGEEL+KLIG+P+YIECSSKTQ
Sbjct:  100 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.008e-29
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PELRHYAPGVPIILVGTKLDLRDDKQF A+HPGAVPI+TAQGEEL+KLIGAP YIECS+KTQ
Sbjct:  100 WVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.008e-29
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ
Sbjct:  100 WIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.846e-29
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPI+TAQGEELRKLIGA  YIECSSKTQ
Sbjct:  100 WIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.025e-28
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITTAQGEELRKLI AP YIECSSK+Q
Sbjct:  100 WIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.283e-28
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAVPITT QGEEL+KLIGAP YIECSSK+Q
Sbjct:  100 WIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ 163          
The following BLAST results are available for this feature:
BLAST of CK934188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RAC1_LOTJA1.430e-3096.88Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC1_BETVU1.211e-2992.19Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC1_ARATH2.697e-2990.63Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC6_ORYSJ4.600e-2992.19Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC5_ARATH4.600e-2990.63Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC3_ARATH6.008e-2989.06Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC11_ARATH6.008e-2990.63Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC5_ORYSJ7.846e-2992.19Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RHO1_PEA1.025e-2890.63Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC6_ARATH2.283e-2887.50Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934188 ID=CK934188; Name=CK934188; organism=Citrus sinensis; type=EST; length=287bp
TTTTTTTTTTTAACTAGCTTCTCATTTCCTCTTGTTCTAATGCTTGATAT
CTGATTGTGGTGTGCTGATGATTTTTTTTTTAAACAATGTATAGTGGATT
CCTGAGTTGAGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGAC
GAAGCTCGATCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTG
CAGTGCCAATTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGT
GCTCCTGTTTACATTGAGTGTAGTTCCAAAACACAAC
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