CK934191

Overview
NameCK934191
Unique NameCK934191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2114 contig Csv1_Contig2114:234..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 8.492e-67
Identity = 130/181 (71.82%), Postives = 149/181 (82.32%), Query Frame = 3
Query:    3 GSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKV---LVPASEQNGRNG----KKTEIETQREVTTYWRKFVSXXKANNKNKIC 524
            GSSQVIAQYYQLIRLG+EGY+NVMENC ENA VL+EGLEKTGRFNI+SK+ GVPLVAFSLKDN++H+EFE++E LRRFGWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV DI KVLHELD+LP++V   L  A EQ   NG    KKT+ E Q E+ T W+KFV   K    N++C
Sbjct:  321 GSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVE-EKKKKTNRVC 500          
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 6.729e-64
Identity = 127/176 (72.16%), Postives = 143/176 (81.25%), Query Frame = 3
Query:    3 GSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNG-------KKTEIETQREVTTYWRKFVSXXKANN 509
            GSSQ+IAQYYQLIRLGFEGY+NVMENC EN +VLKEG+EKT RFNIVSKD+GVP+VAFSLKD+  H+EFE++E+LRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLV DI+KVLHELD+LPSK+    S++ G  G       KK E E   EV   WRKFV   K  N
Sbjct:  320 GSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKI----SKKMGIEGIAENVKEKKMEKEILMEVIVGWRKFVKERKKMN 491          
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.269e-62
Identity = 123/176 (69.89%), Postives = 143/176 (81.25%), Query Frame = 3
Query:    3 GSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVL------VPASEQNGRN----GKKTEIETQREVTTYWRKFVSXXK 500
            GSSQVIAQYYQLIRLG EGYRNVMENC EN +VL+EGLEKT RFNIVSKDEGVPLVAFSLKD+  H EFE++++LRR+GWIVPAYTMP +AQHITVLRVVIREDFSRTLAERLV+DI KV+ ELD LPS+V+         SE N  N     KK++I+ QR++ T W+KFV+  K
Sbjct:  321 GSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRK 496          
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.830e-51
Identity = 105/171 (61.40%), Postives = 126/171 (73.68%), Query Frame = 3
Query:    3 GSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSK-----VLVPASEQNGRNG------KKTEIETQREVTTYWRK 482
            GS Q+IAQYYQLIRLGFEGY+NVM+NC  NA VL EG+ K GRF+IVSKD GVP+VAFSL+D+ ++  FEV+E LRRFGWIVPAYTMP DA+HI VLRVVIREDFS +LAERLV DI K+L ELD+ P +     V V A E     G          +ETQ+++  +WRK
Sbjct:  322 GSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRK 492          
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.496e-20
Identity = 52/144 (36.11%), Postives = 78/144 (54.17%), Query Frame = 3
Query:    6 SSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNG 431
            +SQ+I QYY  +R GFEGYR + E   + A+ L + +EK+G F I++    +P+V + LKD  +     +++A+ L   GW VPAY +PAD     + R V R D    +AE    D    LH L+   ++VL    E+N   G
Sbjct:  323 ASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDDLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADALHNLEH--ARVLYHDKERNDSYG 464          
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 47/126 (37.30%), Postives = 77/126 (61.11%), Query Frame = 3
Query:    6 SSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKDNKRH--DEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 377
            +SQ+I QYY  +R GF+GY+ + E  H+ AM L E +EKTG F I++    +P+V + LK+N     + +++A+ L   GW VPAY +P + ++  + R+VIR DF   +A   V D+ + +  L+
Sbjct:  322 ASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLPIVCYKLKENSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIDALN 447          
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 46/126 (36.51%), Postives = 78/126 (61.90%), Query Frame = 3
Query:    6 SSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELD 377
            +SQ+I QYY  +R GF+GY+ + E  H+ AM L + +EKTG F I++    +P+V + LK+  N+  + +++A+ L   GW VPAY +P + ++  + R+VIR DF   +A   V D+ + +  L+
Sbjct:  322 ASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLPIVCYKLKEDSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIEALN 447          
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 3
Query:    6 SSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNG 431
            +SQ+I QYY  +R GFEGYR + E   + A+ L + +EK+G F I++    +P+V + +K+  +     +++A+ L   GW VPAY +PAD     + R V R D    +AE    D    +H L+   ++VL    E+N   G
Sbjct:  323 ASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIHNLEH--ARVLYHDKERNDSYG 464          
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 48/144 (33.33%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    6 SSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNG 431
            +S +I QYY  +R GFEGYR + +   + A  L   +E+TG F+I +    +P+V + LKD  N +   +++A+ L+  GW VPAY +P + ++I + R V R D    +AE  + D    + EL++  + +L   ++Q+G +G
Sbjct:  320 ASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLADRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN--AHILFHDTQQSGVHG 461          
BLAST of CK934191 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.918e-18
Identity = 48/144 (33.33%), Postives = 81/144 (56.25%), Query Frame = 3
Query:    6 SSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDEGVPLVAFSLKD--NKRHDEFEVAELLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVLDITKVLHELDSLPSKVLVPASEQNGRNG 431
            +S +I QYY  +R GFEGYR + +   + A  L   +E+TG F+I +    +P+V + LKD  N     +++A+ L+  GW VPAY +P   ++I + R V R D    +AE  + D    + EL++  + +L   ++Q+G +G
Sbjct:  320 ASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLPIVCYKLKDDANVNWTLYDLADRLQMRGWQVPAYPLPKSLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN--AHILFHDTQQSGVHG 461          
The following BLAST results are available for this feature:
BLAST of CK934191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
DCE_PETHY8.492e-6771.82Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE2_ARATH6.729e-6472.16Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE1_ARATH1.269e-6269.89Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_SOLLC3.830e-5161.40Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCEC_LISIN3.496e-2036.11Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCE_LACLM1.329e-1937.30Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA3.865e-1936.51Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISMO6.594e-1934.03Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISIN8.611e-1933.33Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_LISMO1.918e-1833.33Glutamate decarboxylase beta OS=Listeria monocytog... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_B11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934191 ID=CK934191; Name=CK934191; organism=Citrus sinensis; type=EST; length=545bp
AAGGTTCTAGCCAAGTAATTGCTCAGTACTACCAACTAATCCGCTTAGGT
TTTGAGGGATACCGCAATGTGATGGAGAATTGTCACGAAAATGCAATGGT
GCTGAAAGAAGGACTAGAGAAAACCGGCCGCTTCAACATTGTGTCAAAGG
ACGAAGGGGTTCCGTTGGTGGCATTTTCTCTCAAGGACAACAAACGCCAC
GATGAATTCGAAGTGGCCGAATTGCTGCGCCGTTTTGGTTGGATTGTGCC
AGCGTACACCATGCCCGCTGACGCTCAGCACATCACCGTGTTACGTGTCG
TCATCAGGGAAGACTTCTCTCGCACACTTGCCGAGCGCCTTGTGCTCGAC
ATCACAAAAGTGCTTCATGAGCTTGATTCGCTTCCTTCAAAAGTGCTTGT
ACCTGCTTCTGAACAGAATGGAAGGAATGGAAAGAAGACTGAAATTGAGA
CTCAGAGGGAAGTCACTACTTACTGGAGGAAATTCGTCTCNNNNNNGAAA
GCTAATAACAAGAATAAAATTTGTTAAGACACACCCCCCCCCCCC
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