CK934203

Overview
NameCK934203
Unique NameCK934203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:671..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-31
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLG  G   P
Sbjct:   67 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP 113

HSP 2 Score: 64.3142 bits (155), Expect = 3.742e-31
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPEILSKNGVKFGEAVWFKAGAQIFSEG
Sbjct:  105 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 139
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-31
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLG  G   P
Sbjct:   67 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP 113

HSP 2 Score: 64.3142 bits (155), Expect = 3.742e-31
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPEILSKNGVKFGEAVWFKAGAQIFSEG
Sbjct:  105 LGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 139
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.076e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFP 114

HSP 2 Score: 61.6178 bits (148), Expect = 1.076e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G +FPE+LSKNGV+FGEAVWFKAGAQIFSEG
Sbjct:  106 LGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEG 140
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.400e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   82 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 128

HSP 2 Score: 61.2326 bits (147), Expect = 1.400e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAGAQIFSEG
Sbjct:  120 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.400e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   82 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 128

HSP 2 Score: 61.2326 bits (147), Expect = 1.400e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAGAQIFSEG
Sbjct:  120 LGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEG 154
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-30
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115

HSP 2 Score: 63.1586 bits (152), Expect = 1.401e-30
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPEILSKNGVKFGEAVWFKAG+QIFSEG
Sbjct:  107 LGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEG 141
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.401e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   67 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 113

HSP 2 Score: 61.2326 bits (147), Expect = 1.401e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:  105 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 139
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.401e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   66 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 112

HSP 2 Score: 61.2326 bits (147), Expect = 1.401e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:  104 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 138
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.402e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   59 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 105

HSP 2 Score: 61.2326 bits (147), Expect = 1.402e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:   97 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 131
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.405e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   32 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 78

HSP 2 Score: 61.2326 bits (147), Expect = 1.405e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:   70 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 104
The following BLAST results are available for this feature:
BLAST of CK934203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB23_ORYSJ3.742e-3187.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.742e-3187.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI1.076e-3089.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2A_PYRPY1.400e-3089.36Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY1.400e-3089.36Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_GOSHI1.401e-3087.23Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_SOYBN1.401e-3089.36Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE1.401e-3089.36Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA1.402e-3089.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA1.405e-3089.36Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934203 ID=CK934203; Name=CK934203; organism=Citrus sinensis; type=EST; length=227bp
CATCATACTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTG
GTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTG
ATCCACAGCAGATGGGCAATGCTTGGANNNNNGGGGGGGCGTCTTCCCTG
AAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAG
GCTGGCGCTCAAATATTCTCTGAAGGT
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