CK934222
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SINAL (DNA-directed RNA polymerase subunit beta' OS=Sinapis alba GN=rpoC1 PE=1 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16 Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNFDFTDSKYETVIP 184 C THVWYLKRLPSYIANLLDKPLKELEGLVYCDV FDRN +F+ ++ T P Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDVCFDRNPNFSFARPITKKP 163
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLTU (DNA-directed RNA polymerase subunit beta' OS=Solanum tuberosum GN=rpoC1 PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 4.308e-14 Identity = 35/43 (81.40%), Postives = 36/43 (83.72%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNFDF 154 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD+ NF F Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDIESYPNFSF 153
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CITSI (DNA-directed RNA polymerase subunit beta' OS=Citrus sinensis GN=rpoC1 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.308e-14 Identity = 35/40 (87.50%), Postives = 35/40 (87.50%), Query Frame = 2 Query: 23 GCXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 GC THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 110 GCPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_VITVI (DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_TOBAC (DNA-directed RNA polymerase subunit beta' OS=Nicotiana tabacum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 110 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 148
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLLC (DNA-directed RNA polymerase subunit beta' OS=Solanum lycopersicum GN=rpoC1 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SOLBU (DNA-directed RNA polymerase subunit beta' OS=Solanum bulbocastanum GN=rpoC1 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_RANMC (DNA-directed RNA polymerase subunit beta' OS=Ranunculus macranthus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PIPCE (DNA-directed RNA polymerase subunit beta' OS=Piper cenocladum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PANGI (DNA-directed RNA polymerase subunit beta' OS=Panax ginseng GN=rpoC1 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 2.138e-13 Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDFSFAR 149 The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bpback to top |