CK934247

Overview
NameCK934247
Unique NameCK934247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1960 contig Csv1_Contig1960:1..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934247 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.077e-17
Identity = 38/61 (62.30%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  511 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKRP 693
            DC   CAARC+  SRP +C RAC TCC RC CVPPGT GN E C  CY  +TT GNK K P
Sbjct:   45 DCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETC-PCYASLTTHGNKRKCP 104          
BLAST of CK934247 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.587e-16
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  511 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKRP 693
            DC   C ARC+   RP +C RAC TCC RC CVPPGTYGN +KC +CY  +TT G + K P
Sbjct:   39 DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKC-QCYASLTTHGGRRKCP 98          
BLAST of CK934247 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.294e-14
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 1
Query:  511 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKRP 693
            DC   C  RC   SRPN+C RAC +CC RC CVPPGT GN   C  CY  +TTRG + K P
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLC-PCYASITTRGGRLKCP 99          
BLAST of CK934247 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.994e-11
Identity = 31/61 (50.82%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  511 DCIPLCAARCKAHSRPNVCGRACTTCCVRCKCVPPGTYGNREKCGKCYTDMTTRGNKPKRP 693
            DC   C  RC   SR  +C RAC +CC RC CVPPGT GN   C  CY  +TT G + K P
Sbjct:   40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLC-PCYASITTHGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of CK934247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU7.077e-1762.30Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH4.587e-1657.38Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH4.294e-1455.74Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH1.994e-1150.82Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004261_D12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934247 ID=CK934247; Name=CK934247; organism=Citrus sinensis; type=EST; length=908bp
GGGGGGCACNNNCCAGGGACTAGCTAGCTTCTCAAACTTTCTTCTTGGTT
CCTTTAGGCTGGGTTCTGTCTTCCAATGGCTTTCAGAGCTGCTCTGCTTC
TGTTGGCCACTTTGCTTTTAGTCTCTACAAGTGTTTTATCCAACAATGAG
GAGGAATATCTGCTAGAAAAGGATACTACTTACCCCAAAACCCCAGTACC
TGCACCAGCTCCTTCTAAGGCTCCAGTTAAGCCATTCACTCCACTACCAG
TAGTGAAGCCACCCACCACTTATCCACCACCAGTGAAGCCACCCACAACC
ACTCCCCCACCAGCACCACCAGTGAAGTCCCCACCAGTGAAGCCACCAAC
AGTTACGCCGGCACCACCACTCAAGCCACCCACCACTTATCCACCACCAG
TGAAGCCACCCACAACCACTCCCCCACCAGTGACCCCACCTAAAACAGCT
CCTGCCCCCCAAGTTCCCTCTCCGGCATCTCCACCAATGCCTATTGTGAG
GTCAAACAAAGATTGCATCCCACTATGTGCAGCAAGATGCAAGGCACACT
CAAGGCCAAACGTTTGTGGAAGAGCTTGCACTACATGCTGTGTTAGGTGC
AAATGTGTTCCACCAGGAACTTATGGCAACAGAGAGAAGTGTGGCAAGTG
CTACACTGATATGACTACTCGGGGCAATAAACCCAAGCGCCCTTAAGCTA
CAAATATTAGCATCTGTTGAAATTTTATGTTAGCTTAAGTTGACCTGCAA
TAAGTGTTAAAGAGTAAATGGTTTTCTAGTGACTTTCTGTGTCACTGCAA
GATTGTGCATGTAGTGTGTTAAGCCATGGTTGATCTTCTGTTAGTTTCTG
CTGAAATTTCCCTTGTTAATCCTAGACATTCATATATAAAGTAGTATATT
TTCAGTTT
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