CK934258

Overview
NameCK934258
Unique NameCK934258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX7_MOUSE (Sorting nexin-7 OS=Mus musculus GN=Snx7 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.268e-21
Identity = 61/161 (37.89%), Postives = 92/161 (57.14%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVE 822
            L ++V  P      ++ +I+YR++TKT+  E+   E  V RRY DF+WL+ +L E +  + IPPLPEK  V+    RF+ +FIE RR+ L  F+NRIA HP L  +ED K FL A  E +       + Y K+ P  L ++ + V++  S +   K +P E
Sbjct:   32 LFITVDAPESHVTTIETFITYRIVTKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKVFLTAQAEEL-------SSYKKQGPGLLSRMGQTVRAVASSMRGVKNRPEE 185          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX30_XENTR (Sorting nexin-30 OS=Xenopus tropicalis GN=snx30 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 70/193 (36.27%), Postives = 97/193 (50.26%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918
            L V+V DP K    ++ YI+YRV TKT   E+  PE  + RRY DF WLR++L E     FIPPLPEK  V+    RFS EF+E RR+ LD F+ RIA HP L  +E    FL A          +D    KK+   L+    +    V+     + +PV     E+  +  Y+   +  L    + A R++K
Sbjct:  100 LFVTVDDPKKHVCTMETYITYRVSTKTTRTEFDLPEYSIRRRYQDFDWLRNKLEETQPTHFIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA----------KDLNSHKKQGITLLSKMGESVRYVTSGYKLRNRPV-----EFATITDYLDTFQLKLGTIDRIAQRIIK 277          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX7_MACFA (Sorting nexin-7 OS=Macaca fascicularis GN=SNX7 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.292e-21
Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESN 831
            L ++V +P      ++ +I+YR+ITKT+  E+   E  V RRY DF+WL+ +L E +  + IPPLPEK  V+    RF+ +FIE RR+ L  F+NRIA HP L  +ED K FL A    +   + Q  G   +    + Q  + V S +  V    E+ +E +N
Sbjct:   32 LFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSR----MGQTVRAVASSMRGVKNRPEEFMEMNN 191          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX7_HUMAN (Sorting nexin-7 OS=Homo sapiens GN=SNX7 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.292e-21
Identity = 61/164 (37.20%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESN 831
            L ++V +P      ++ +I+YR+ITKT+  E+   E  V RRY DF+WL+ +L E +  + IPPLPEK  V+    RF+ +FIE RR+ L  F+NRIA HP L  +ED K FL A    +   + Q  G   +    + Q  + V S +  V    E+ +E +N
Sbjct:   32 LFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSR----MGQTVRAVASSMRGVKNRPEEFMEMNN 191          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX1_BOVIN (Sorting nexin-1 OS=Bos taurus GN=SNX1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.073e-20
Identity = 65/211 (30.81%), Postives = 112/211 (53.08%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGK-------EKPVEESNPEYEKLK--HYIFE-LENHLADAQKHAXRLVK 918
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++     V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F      VS + +         E+ ++E   E ++L+  H + E L NH  +   +  +  K
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKHFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQTLSGAGLLKMFNKATDAVSKMTINMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAK 349          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX1_MACFA (Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.402e-20
Identity = 65/211 (30.81%), Postives = 113/211 (53.55%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGK-------EKPVEESNPEYEKLK--HYIFE-LENHLADAQKHAXRLVK 918
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F      VS + +         E+ ++E   E ++L+  H + E L NH  +   +  +  K
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAK 349          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX1_HUMAN (Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.402e-20
Identity = 65/211 (30.81%), Postives = 113/211 (53.55%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGK-------EKPVEESNPEYEKLK--HYIFE-LENHLADAQKHAXRLVK 918
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F      VS + +         E+ ++E   E ++L+  H + E L NH  +   +  +  K
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAK 349          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX1_RAT (Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.831e-20
Identity = 64/198 (32.32%), Postives = 109/198 (55.05%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGK-------EKPVEESNPEYEKLK--HYIFE-LENH 879
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F      VS + +         E+ ++E   E ++L+  H + E L NH
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQALSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNH 336          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX1_MOUSE (Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.831e-20
Identity = 64/198 (32.32%), Postives = 109/198 (55.05%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGK-------EKPVEESNPEYEKLK--HYIFE-LENH 879
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E        +  G      A L+++F      VS + +         E+ ++E   E ++L+  H + E L NH
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEE------LPRAVGTQALSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNH 336          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX1_PONAB (Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.391e-20
Identity = 49/125 (39.20%), Postives = 81/125 (64.80%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            L+V +TDP K+G+G+ AY++Y+V T+T+ P ++  +  V RR+SDF+ L ++L EK+   G  +PP PEKS +        ++   SAEF+E RR  L+ ++ RI +HP + Q  D++ FL+ +E
Sbjct:  145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYIQRIVNHPTMLQDPDVREFLEKEE 269          
The following BLAST results are available for this feature:
BLAST of CK934258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SNX7_MOUSE1.268e-2137.89Sorting nexin-7 OS=Mus musculus GN=Snx7 PE=2 SV=1[more]
SNX30_XENTR2.162e-2136.27Sorting nexin-30 OS=Xenopus tropicalis GN=snx30 PE... [more]
SNX7_MACFA6.292e-2137.20Sorting nexin-7 OS=Macaca fascicularis GN=SNX7 PE=... [more]
SNX7_HUMAN6.292e-2137.20Sorting nexin-7 OS=Homo sapiens GN=SNX7 PE=1 SV=1[more]
SNX1_BOVIN1.073e-2030.81Sorting nexin-1 OS=Bos taurus GN=SNX1 PE=2 SV=1[more]
SNX1_MACFA1.402e-2030.81Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=... [more]
SNX1_HUMAN1.402e-2030.81Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3[more]
SNX1_RAT1.831e-2032.32Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 ... [more]
SNX1_MOUSE1.831e-2032.32Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1[more]
SNX1_PONAB2.391e-2039.20Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934258 ID=CK934258; Name=CK934258; organism=Citrus sinensis; type=EST; length=921bp
GGGGAAACCAAATCGTGTTGACTAAGAAAATACCTCAGGCTCAGGTTGTC
ACCGGTCGCTCTGGTGGTATCTCGCGCCTTAATTCGCAAGTTGCCGGTGC
CCAGCGCACTGCGCTCCACAGCGCATTTTAGACAACACCTCAATTTACAC
GCCTCACTACCAAACAAAAAGCTTCTGCTAGACTATTCAAATAGGAAGTT
ATTAATTCGTTTTCTCCTCAATCCTTCTTCTTCCGTTCTTCGGTTCCATT
CTCTAGTTCCCAATTAGATCATGATTAACACGGAGCAGCAGAGAAGCGCA
TCCGGATCGTCGCAGAGCCCTAGATCCCCGTCATCGCAGCCGTATTTATC
GGTGTCAGTAACCGATCCCGTGAAATTAGGCAATGGAGTACAAGCTTACA
TTTCCTATCGAGTCATCACCAAGACAAATTTTCCTGAATATCAAGGCCCC
GAGAAGATTGTTATTCGCCGTTACAGTGATTTTGTCTGGTTACGTGATCG
ACTTTTTGAGAAGTACAAGGGCATTTTCATTCCCCCTCTTCCTGAGAAGA
GTGCCGTAGAGAAGTTTCGTTTCAGTGCTGAATTTATTGAGATGAGACGC
CAAGGATTGGATTTGTTTGTCAATCGGATTGCTTCACATCCTGAGCTGCA
GCAAAGTGAGGATTTAAAAACATTTTTGCAGGCAGACGAAGAGACAATGG
AGAGATTAAGGTCTCAAGACACTGGTTATTTCAAAAAGAAGCCAGCTGAT
TTGATGCAAATCTTCAAGGATGTACAATCTAAAGTGAGTGATGTTGTTCT
TGGAAAAGAGAAGCCAGTTGAAGAATCTAATCCTGAATACGAGAAGCTGA
AACACTACATTTTTGAGCTGGAAAACCACTTGGCTGATGCTCAGAAACAT
GCNNNTCGTCTTGTCAAAAGN
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