CK934266

Overview
NameCK934266
Unique NameCK934266
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934266_ssr363 microsatellite CK934266_ssr363:363..374. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1117 contig Csv1_Contig1117:512..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GSTF3_ARATH (Glutathione S-transferase ERD13 OS=Arabidopsis thaliana GN=ERD13 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 4.339e-28
Identity = 53/76 (69.74%), Postives = 68/76 (89.47%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKV 232
            +KES+EKL + LDVYE +LSK++YLAGDF SLADL+H+PFT YLVGP+G+ H+I+DRKHVSAWWD IS+R +WK+V
Sbjct:  132 IKESEEKLAEVLDVYEAQLSKNEYLAGDFVSLADLAHLPFTEYLVGPIGKAHLIKDRKHVSAWWDKISSRAAWKEV 207          
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GSTF_HYOMU (Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.878e-17
Identity = 43/78 (55.13%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLE 238
            V E++EKLGK LDVYE RL  SKYL GD F+LADL H P  +YL+G   +  +   R HVSAW  DI  RP+W K +E
Sbjct:  133 VAENEEKLGKVLDVYESRLKDSKYLGGDSFTLADLHHAPAMNYLMGTKVKS-LFDSRPHVSAWCADILARPAWSKAIE 209          
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GSTF7_ARATH (Glutathione S-transferase OS=Arabidopsis thaliana GN=At3g03190 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.917e-16
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLEL 241
            V+E   K  K LDVYE RL+ ++YL GD F+LADLSH+P   Y++       ++  R++++ WW++IS RP+WKK++EL
Sbjct:  133 VEELKVKFDKVLDVYENRLATNRYLGGDEFTLADLSHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211          
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GSTF6_ARATH (Glutathione S-transferase 6, chloroplastic OS=Arabidopsis thaliana GN=GST6 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.470e-15
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCK 247
            V+E + KL K LDVYE RL+KS++LAGD F+LADL H+P  HYL+G   +  +   R  VS W   IS RP+W KV++L K
Sbjct:  183 VQELEGKLQKVLDVYEARLAKSEFLAGDSFTLADLHHLPAIHYLLGTDSKV-LFDSRPKVSEWIKKISARPAWAKVIDLQK 262          
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GST11_ARATH (Glutathione S-transferase 11 OS=Arabidopsis thaliana GN=GST11 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 7.185e-15
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVL 235
            V+E + KL K LDVYE RL +SKYLA D F+L DL  IP   YL+G   ++ +  +R HVSAW  DI++RPS KKVL
Sbjct:  134 VEEEEAKLAKVLDVYEHRLGESKYLASDKFTLVDLHTIPVIQYLLGTPTKK-LFDERPHVSAWVADITSRPSAKKVL 209          
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GSTF1_ARATH (Glutathione S-transferase 1 OS=Arabidopsis thaliana GN=GST1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.226e-14
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVL 235
            V+E + KL K LDVYE RL +SKYLA D F+L DL  IP   YL+G   ++ +  +R HVSAW  DI++RPS +KVL
Sbjct:  133 VEEEEAKLAKVLDVYEHRLGESKYLASDHFTLVDLHTIPVIQYLLGTPTKK-LFDERPHVSAWVADITSRPSAQKVL 208          
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GSTF1_ORYSJ (Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica GN=GSTF1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.601e-14
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKV 232
            V ES EKL K L+VYE RLS+S YLAGDF S ADL+H P+T Y +G      +     HV AWW+ +  RPS KK+
Sbjct:  136 VDESAEKLKKVLEVYEARLSQSTYLAGDFVSFADLNHFPYTFYFMG-TPYASLFDSYPHVKAWWERLMARPSVKKL 210          
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GSTF_SILCU (Glutathione S-transferase OS=Silene cucubalus GN=GST PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 2.091e-14
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYL-AGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCK 247
            V+E++ KL K LDVYE RL++S+YL A D F+L DL H+P   YL+G   ++ +  +R HVSAW   I  RPSW+K L L K
Sbjct:  135 VEENEAKLAKVLDVYEARLTESEYLGANDSFTLVDLHHLPLLGYLMGTQVKK-LFEERAHVSAWCKKILARPSWEKTLALQK 215          
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GSTF2_TOBAC (Glutathione S-transferase APIC OS=Nicotiana tabacum GN=APIC PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.091e-14
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLE 238
            VKES+ +L K LD+YE RL++SKYL GD F+L DL HIP  +YL+    ++ +   R  VSAW  DI  RP+W K LE
Sbjct:  133 VKESEVQLSKVLDIYETRLAESKYLGGDSFTLVDLHHIPNIYYLMSTKVKE-VFDSRPRVSAWCADILARPAWVKGLE 209          
BLAST of CK934266 vs. ExPASy Swiss-Prot
Match: GSTF2_ORYSJ (Probable glutathione S-transferase GSTF2 OS=Oryza sativa subsp. japonica GN=GSTF2 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 2.091e-14
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 2
Query:    5 VKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCKTP 253
            V+E+ EKL K L+VYE RL+K KYLAGD+ S+ADLSH+  T   +G      ++    HV AWW D+  RPS +KV  L K P
Sbjct:  133 VEENLEKLKKVLEVYEARLTKCKYLAGDYISVADLSHVAGT-VCLGATPHASVLDAYPHVKAWWTDLMARPSSQKVASLMKPP 214          
The following BLAST results are available for this feature:
BLAST of CK934266 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GSTF3_ARATH4.339e-2869.74Glutathione S-transferase ERD13 OS=Arabidopsis tha... [more]
GSTF_HYOMU5.878e-1755.13Glutathione S-transferase OS=Hyoscyamus muticus PE... [more]
GSTF7_ARATH2.917e-1645.57Glutathione S-transferase OS=Arabidopsis thaliana ... [more]
GSTF6_ARATH2.470e-1551.85Glutathione S-transferase 6, chloroplastic OS=Arab... [more]
GST11_ARATH7.185e-1554.55Glutathione S-transferase 11 OS=Arabidopsis thalia... [more]
GSTF1_ARATH1.226e-1453.25Glutathione S-transferase 1 OS=Arabidopsis thalian... [more]
GSTF1_ORYSJ1.601e-1452.63Probable glutathione S-transferase GSTF1 OS=Oryza ... [more]
GSTF_SILCU2.091e-1450.00Glutathione S-transferase OS=Silene cucubalus GN=G... [more]
GSTF2_TOBAC2.091e-1451.28Glutathione S-transferase APIC OS=Nicotiana tabacu... [more]
GSTF2_ORYSJ2.091e-1449.40Probable glutathione S-transferase GSTF2 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934266 ID=CK934266; Name=CK934266; organism=Citrus sinensis; type=EST; length=437bp
GGGGGTGAAGGAGAGTGACGAAAAGCTTGGAAAAACGCTCGACGTTTACG
AGGAGAGGCTGTCGAAGAGCAAGTATTTGGCTGGTGATTTCTTCAGCCTG
GCTGATCTGAGTCACATTCCATTTACCCACTACTTGGTTGGGCCGATGGG
GAGACAGCATATGATTAGAGACAGGAAGCATGTGAGTGCCTGGTGGGATG
ATATTAGCAACAGGCCGTCCTGGAAGAAAGTCCTTGAGCTCTGTAAGACT
CCTTTCGGCTGAGCTTGATTGTATGTGTTTCAATTTTCGGGCTTGTGTTT
TACTTCTCTACTACTTGGTTTGTTTCTGTCTGTGGGATATGTTTCTTGCA
TATGTGTGTTTCAAATAAATAAATGTTTGGAGTTGGAGCTTTTTTTTAAA
AAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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