CK934268

Overview
NameCK934268
Unique NameCK934268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934268_ssr434 microsatellite CK934268_ssr434:434..445. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9154 contig Csv1_Contig9154:679..1170. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 9.490e-45
Identity = 82/88 (93.18%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    7 SPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 270
            SPTTVK+VSVVWDAYEATKDAHG+CILTEWDEFKTLDYQ+I+DNMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct:  393 SPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480          
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.515e-42
Identity = 76/87 (87.36%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    4 MSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPA 264
            MSPTTVKQVSV WDAYEATKDAH VC+LTEWDEFK+LDYQ+I+DNMQKPAF+FDGRN+++ NKLREIGFIVYSIGKPLDPWLKDMPA
Sbjct:  392 MSPTTVKQVSVTWDAYEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478          
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.188e-41
Identity = 75/89 (84.27%), Postives = 84/89 (94.38%), Query Frame = 1
Query:    4 MSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 270
            MSPTTVKQV+V WDAYEATKDAHG+CI+TEWDEFK LD+Q+I+DNMQKPAFVFDGRN+++  KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct:  392 MSPTTVKQVTVTWDAYEATKDAHGICIMTEWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480          
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    7 SPTTVKQ-VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 231
            SP  VK+ V +  D Y A +  H + I TEWDEF  LD++RIY +M KPA++FDGR ++D  +L++IGF V +IGK
Sbjct:  384 SPEKVKKAVQIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459          
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.337e-14
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   28 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 231
            V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  395 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.337e-14
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   28 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 231
            V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  395 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.337e-14
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   28 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 231
            V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  395 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.977e-14
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   28 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 231
            V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  395 VTISKDPYEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.977e-14
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   28 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD--ANKLREIGFIVYSIGKPLDPWLKDMPAVA*KRRQWACSC 300
            V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK           V+ KR  +A SC
Sbjct:  395 VTISQDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK----------KVSAKRIPFASSC 477          
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.633e-14
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   28 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLD 240
            ++V  D Y A + AH + +LTEWDEF  L+Y +I+++MQ PA +FDGR ++D   LREIGF  ++IG   D
Sbjct:  400 ITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470          
The following BLAST results are available for this feature:
BLAST of CK934268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UGDH_SOYBN9.490e-4593.18UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH2_ARATH1.515e-4287.36Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH1_ARATH2.188e-4184.27Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH_DROME2.062e-1550.00UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_PONAB1.337e-1455.71UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN1.337e-1455.71UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_BOVIN1.337e-1455.71UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_RAT2.977e-1454.29UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_CHICK2.977e-1447.31UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_CAEEL6.633e-1447.89UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934268 ID=CK934268; Name=CK934268; organism=Citrus sinensis; type=EST; length=494bp
GGGATGAGTCCCACCACGGTGAAGCAAGTGAGCGTGGTCTGGGATGCCTA
TGAAGCAACAAAAGATGCCCATGGTGTCTGCATCTTGACCGAGTGGGATG
AGTTCAAGACTCTTGACTATCAGAGGATATATGACAACATGCAGAAACCA
GCATTCGTGTTTGATGGCAGGAATGTTGTTGATGCCAACAAGTTGAGGGA
GATTGGTTTCATCGTGTACTCCATTGGTAAGCCACTCGATCCATGGTTGA
AGGACATGCCGGCTGTTGCATAAAAGAGACGCCAATGGGCATGCTCGTGT
CATCGGGCATCAGATTATAGATGATGAAGAAGTCAGCTCAATTCTTTACT
ATATTTTGATGAGTTTTTGTTGTGCCTTTGCTTTTGCTAAGAGGCTCTAT
GTTTTTGCCTTATCACTTTATTTGATGATACTACTGTCTGTCTGTTACTT
GTTTGTTAGAAGACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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