CK934269

Overview
NameCK934269
Unique NameCK934269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.303e-34
Identity = 68/85 (80.00%), Postives = 78/85 (91.76%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            MAS DVE+RCFVGGLAWAT D +L  AFS YG++L+SKIINDRETGRS GFGF+TF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.702e-34
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            A+VE+RCFVGGLAWAT D SL +AFS +GDI +SKIINDRETGRS GFGF+TF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:    2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.903e-34
Identity = 66/85 (77.65%), Postives = 78/85 (91.76%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            MAS DVE+RCFVGGLAWAT D +L  AF+ YGD+++SKIINDRETGRS GFGF+TF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.441e-33
Identity = 66/85 (77.65%), Postives = 78/85 (91.76%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            MAS DVE+RCFVGGLAWAT + SL  AFS +G++++SKIINDRETGRS GFGF+TF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            MA+ADVE+RCFVGGLAWAT++ SL  AF++YG+IL+SK+I DRETGRS GFGF+TF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.491e-30
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            ADVE+RCFVGGL WAT D SL  AFS YGD+++SKII DRETGRS GFGF+TF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:    2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.666e-30
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            ++VE+RCFVGGLAWAT D  L   FS +GD+++SKIINDRE+GRS GFGF+TF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.400e-30
Identity = 58/82 (70.73%), Postives = 72/82 (87.80%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            ++VE+RCFVGGLAWAT D+ L   FS +G++++SKIINDRETGRS GFGF+TF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.262e-29
Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            MA+ADVE+RCFVGGLAWAT + +L +AF+ +G +++SK+I DRETGRS GFGF+TF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.279e-21
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  140 SSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            +SLH AFS YG++LESKII DRET RS GFGF+TF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of CK934269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GRP1_SINAL1.303e-3480.00Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA1.702e-3482.93Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP7_ARATH2.903e-3477.65Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL1.441e-3377.65Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE3.924e-3172.94Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU1.491e-3074.39Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH5.666e-3071.95Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA7.400e-3070.73Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SORBI1.262e-2968.24Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI6.279e-2175.00Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934269 ID=CK934269; Name=CK934269; organism=Citrus sinensis; type=EST; length=585bp
GGGGATCCNNNNGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCACAGGATTTGGATTCATTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATA
CCGAGGTGGCGGCGGTGGATATGGTGGCCGCCATGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGAAACTAGGGTTT
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