CK934282

Overview
NameCK934282
Unique NameCK934282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS1_ARATH (Putative monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 67/99 (67.68%), Postives = 85/99 (85.86%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            ++ ++ ++PVVIFS++SC MSH+IK+LI  +GAN TVYELDE+ NG +IER LV+LGC+P VPAVFIGQ+LVGGA Q+MSLQV NQL+ LL RAGAIWI
Sbjct:    4 ISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELGCKPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31
Identity = 63/100 (63.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:  154 VVTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            ++T+MV ERPVVI+S+SSC MSH IK L+C FGANP VYELDEI  GR+IE+ L++LGC P VP VFIG +LVGGA +VMSL +   L  +L RAGA+W+
Sbjct:    3 MITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS6_ARATH (Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V  +V ++PVVIFS+SSC MSH+I+ LI  FGA  TVYELD+  NG++IE+ LVQ+GC+P VPAVFIGQQ +GGA QVM+LQV NQL+ +L RAGAIW+
Sbjct:    4 VRSLVEDKPVVIFSKSSCCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKALVQMGCKPSVPAVFIGQQFIGGANQVMTLQVKNQLAAMLRRAGAIWV 102          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 60/97 (61.86%), Postives = 73/97 (75.26%), Query Frame = 1
Query:  163 RMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            +M++E+ VVIFS++SC MSH IK L   FG NPT+YELDEI  GR+IE+ L QLGC P VP VFIG QLVGGA QVMSL +   L  +L RAGA+W+
Sbjct:    6 KMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 1
Query:  163 RMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            +M++E+ VVIFS++SC MSH IK L   FG NPT+YELDEI  G++IE+ L QLGC P VP VFIG QLVGGA QVMSL +   L  +L R GA+W+
Sbjct:    6 KMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  163 RMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            +M++E+ VVIFS++SC MSH IK L    G NPT+YELDEI  G++IE  L QLGC P VP VFIG QLVGGA QVMSL +   L  +L RAGA+W+
Sbjct:    6 KMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            + +M++E+ VVIFS +SC MSH IK L    G NPT+YELDEI  G++IE  L QLGC P VP VFIG QLVGGA QVMSL +   L  +L R GA+W+
Sbjct:    4 IQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGALWL 102          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 1
Query:  163 RMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            +M +E+ +VIFS++SC MSH IK L    G NPT+YELDEI  G++IE+ L QLGC P VP VFIG QLVGGA QVMSL +   L  +L R GA+W+
Sbjct:    6 KMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGALWL 102          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 53/100 (53.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQ-LGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V R+ A+R VVIFS SSC M H +  L C  G NPTV ELDE P G+++E+ L + LG  P VPAVFIG +LVG   +VMSL ++  L  LL  AGA+W+
Sbjct:    4 VNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGALWV 103          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXC3_ORYSJ (Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQL--------GCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V R+ +E  VV+FS SSC M HA+K L C  G +PTV+ELD  P GR++ER L +L           P+VP VFIG +LVG   +VM+  +   L  LL  AGA+W+
Sbjct:   29 VERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPTVHELDLDPRGRELERALARLVGYGGPAAASPPVVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135          
The following BLAST results are available for this feature:
BLAST of CK934282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GRXS1_ARATH4.641e-3367.68Putative monothiol glutaredoxin-S1 OS=Arabidopsis ... [more]
GRXS2_ARATH1.143e-3163.00Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana ... [more]
GRXS6_ARATH2.547e-3164.65Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH1.545e-2861.86Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]
GRXS4_ARATH4.495e-2859.79Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXS3_ARATH7.667e-2859.79Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXS8_ARATH8.477e-2757.58Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]
GRXS7_ARATH1.107e-2657.73Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRXC1_ORYSJ4.814e-2253.00Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRXC3_ORYSJ2.920e-1945.79Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_C02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934282 ID=CK934282; Name=CK934282; organism=Citrus sinensis; type=EST; length=703bp
GGGGACAGCNNNCAAAGCCTAATCCTCAACACACACTACCTAGTAGTCCG
ATCTCATATGTAGAAAACTTGAATTAATTTGCGTTAATTTTCTCACAATA
TACTTGTTTTGTTTTAGTTAGTGGTAAATAAACATCAATAAAGAATGGAG
ACGGTGGTGACAAGGATGGTAGCAGAAAGGCCAGTGGTGATATTCAGCAG
GAGCTCATGCTCGATGAGCCATGCCATAAAGGCACTGATCTGCAGCTTCG
GGGCGAATCCAACGGTATACGAGCTAGATGAAATTCCAAATGGACGGCAG
ATAGAGAGGGAGCTGGTGCAGCTTGGGTGTCAACCGATTGTACCGGCAGT
GTTCATTGGCCAGCAGCTTGTTGGTGGTGCCAAGCAGGTCATGAGCCTCC
AAGTTACCAACCAGCTCAGCCATTTGCTTATAAGGGCCGGAGCCATTTGG
ATTTGATCCATCATGACATCCATTCTAGTTTATTTATAGTACTAGTTATT
TTATTTCAAAGTTTTATATTTCTGACGCCTCTGTTATTAGCTAGCTAGTT
TTACACCATGCATAATGGAGACGATTTCATGATAGCTTAATTTGTAAGTT
CATGTGGACTTTATTTTCTATCCATATTCATGTAACCTAGATAGCTCTTG
ATGAATATTATGTTATCTTCCATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
back to top