CK934285 | Citrus Genome Database

Overview


Name	CK934285
Unique Name	CK934285
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	595

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:1..595.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_CITSI (Photosystem II reaction center protein K OS=Citrus sinensis GN=psbK PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.482e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_JASNU (Photosystem II reaction center protein K OS=Jasminum nudiflorum GN=psbK PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.513e-25
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL+ ICLNSALYSSSF F KLPEAYAFLNPIVDVMPVIPV FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLISICLNSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPVFFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_VITVI (Photosystem II reaction center protein K OS=Vitis vinifera GN=psbK PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.282e-24
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL+ ICLNSALYSS+F FAKLPEAYAFLNPIVDVMPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSNFFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_MORIN (Photosystem II reaction center protein K OS=Morus indica GN=psbK PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.674e-24
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL+ ICLNS LYSSSF  AKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSVLYSSSFFVAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_GOSHI (Photosystem II reaction center protein K OS=Gossypium hirsutum GN=psbK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_GOSBA (Photosystem II reaction center protein K OS=Gossypium barbadense GN=psbK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIF+L+ IC NSAL+SSSFLFAKLPEAYAFLNPIVD MPVIPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSSFLFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_COFAR (Photosystem II reaction center protein K OS=Coffea arabica GN=psbK PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.729e-24
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL++ICLNSALYSS F F KLPEAYAFLNPI+D MPVIPV FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLIWICLNSALYSSGFFFGKLPEAYAFLNPIIDFMPVIPVFFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_PHAAO (Photosystem II reaction center protein K OS=Phalaenopsis aphrodite subsp. formosana GN=psbK PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.870e-24
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIF L+ ICLNS LYSSSF FAKLPEAYAF NPI+DVMP+IPVLFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFCLICICLNSTLYSSSFFFAKLPEAYAFFNPIIDVMPIIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_PANGI (Photosystem II reaction center protein K OS=Panax ginseng GN=psbK PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL+ ICLNSALYSSS  FAKLPEAYAFLNPIVD+MPVIP+ FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSLICICLNSALYSSSLFFAKLPEAYAFLNPIVDLMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of CK934285 vs. ExPASy Swiss-Prot
Match: PSBK_LIRTU (Photosystem II reaction center protein K OS=Liriodendron tulipifera GN=psbK PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.307e-24
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 1

Query:  352 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPVLFFLLAFVWQAAVSFR 534
            MLNIFSL+ IC+NSAL+SSSF FAKLPEAYAF NPIVDVMPVIPVLFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSLICICINSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 61

The following BLAST results are available for this feature:

BLAST of CK934285 vs. ExPASy Swiss-Prot

BLAST of CK934285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71


Match Name	E-value	Identity	Description
PSBK_CITSI	9.482e-28	100.00	Photosystem II reaction center protein K OS=Citrus...	[more]
PSBK_JASNU	7.513e-25	91.80	Photosystem II reaction center protein K OS=Jasmin...	[more]
PSBK_VITVI	1.282e-24	90.16	Photosystem II reaction center protein K OS=Vitis ...	[more]
PSBK_MORIN	1.674e-24	91.80	Photosystem II reaction center protein K OS=Morus ...	[more]
PSBK_GOSHI	2.186e-24	90.16	Photosystem II reaction center protein K OS=Gossyp...	[more]
PSBK_GOSBA	2.186e-24	90.16	Photosystem II reaction center protein K OS=Gossyp...	[more]
PSBK_COFAR	3.729e-24	86.89	Photosystem II reaction center protein K OS=Coffea...	[more]
PSBK_PHAAO	4.870e-24	86.89	Photosystem II reaction center protein K OS=Phalae...	[more]
PSBK_PANGI	6.360e-24	88.52	Photosystem II reaction center protein K OS=Panax ...	[more]
PSBK_LIRTU	8.307e-24	88.52	Photosystem II reaction center protein K OS=Liriod...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004261_A07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934285 ID=CK934285; Name=CK934285; organism=Citrus sinensis; type=EST; length=595bp
TTCAATTTCGATTTGGTACTAATAAAGAGTACCAGTGGTATTGGCTGTTC
GTCAATTCCAGTCCAAAGCCCCAAAATTCGATTCTGATTTTAGTGTTAGG
ATTTTGACACATATAGGTGTAAAATACAACTTAATTTATTGATCATTACA
TAGAATTCAATTAAGATATTGTATGAAAGTATGATTTCTTCAATTCTCAC
ACGAGAATAGAAGGATTTTTGTTTTGATTGGGTCGGTTCCAAGAAGTTTT
TTTTGTCTACCTTACTTTCTTTTCTTCATTTTTATCTTATATCAATAAGA
TATTAATAACTCAATCAAAATAAAATTATCTCCAAGAACAAAATGTTTGT
TATGCTTAATATCTTTAGTTTAATGTATATCTGTCTTAATTCTGCCCTTT
ATTCGAGTAGTTTTTTATTCGCTAAATTACCCGAGGCCTACGCTTTTTTG
AATCCAATTGTAGATGTTATGCCAGTAATACCTGTTCTATTTTTTCTCTT
AGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATAAGATCTTTAATATT
GTGCTAGAAAAATTCATGATTTATTCTAGTTCGAAAAAAAAAAAA