CK934286

Overview
NameCK934286
Unique NameCK934286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13689 contig Csv1_Contig13689:58..977. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934286 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.639e-37
Identity = 85/260 (32.69%), Postives = 136/260 (52.31%), Query Frame = 1
Query:  133 LQYLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQG---DRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQELCRVH 903
            L+YLE L+   P+L +  N + D Y+ KLWHQLT ++E  +          L   Y NFI DFE K+  L L    + V+RQ+   ++   ++E + +K++     + +   +     IA   L  G     ++CKK LE  K  L  +T +D  VY+++Y VS+ YH    + +EFYK AL+YL+Y  +E                    G+N+Y FG+L+A+PI+ +L G++  WL   L+AFN GD+ +++ L   H
Sbjct:    7 LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFIRDFENKLRPLSLVEICIAVARQFDTDESR-KFIETISQKVK-----KDKSAYILTLSYIANMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKNALMYLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQQFEGLMSQH 260          
BLAST of CK934286 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.141e-37
Identity = 86/251 (34.26%), Postives = 139/251 (55.38%), Query Frame = 1
Query:  139 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQEL 891
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L    ++                    G+ ++NFGELL HP++ SL  T  +WL   L AFNSGD+ R+Q L
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGDVDRFQTL 251          
BLAST of CK934286 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.141e-37
Identity = 87/251 (34.66%), Postives = 138/251 (54.98%), Query Frame = 1
Query:  139 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQEL 891
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+S+LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L ++  +  SV++ +Y +SS+Y++     A +YK AL +L    ++                    GD ++NFGELL HP++ SL  T  +WL   L AFNSG++ R+Q L
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLSNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGDGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVERFQTL 251          
BLAST of CK934286 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.388e-36
Identity = 85/251 (33.86%), Postives = 139/251 (55.38%), Query Frame = 1
Query:  139 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQEL 891
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L    ++                    G+ ++NFGELL HP++ SL  T  +WL   L AFNSG++ R+Q L
Sbjct:    7 FLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTL 251          
BLAST of CK934286 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.367e-36
Identity = 85/251 (33.86%), Postives = 138/251 (54.98%), Query Frame = 1
Query:  139 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQEL 891
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L    ++                    G+ ++NFGELL HP++ SL  T  +WL   L AFNSG + R+Q L
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGAVDRFQTL 251          
BLAST of CK934286 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.888e-36
Identity = 85/251 (33.86%), Postives = 138/251 (54.98%), Query Frame = 1
Query:  139 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQEL 891
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +E+ +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L    V+                    G+ +YNFGELL HP++ SL  T  +WL   L AFNSG++  +Q L
Sbjct:    7 FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPTVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEEVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCIDVKDLPVSEQQERAFTLGLAGLLGEGVYNFGELLMHPVLESLRSTDRQWLIDTLYAFNSGNVETFQAL 251          
BLAST of CK934286 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.188e-25
Identity = 73/243 (30.04%), Postives = 122/243 (50.21%), Query Frame = 1
Query:  172 LGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDAL---IQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVEXXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIINSLTGTKVEWLYYILQAFNSGDLVRYQEL 891
            L + Y  + DLY++KLW QLT  L  F     F   + +   + LY NF+  F   IN LK  +  +         +A +  L  ++ +L   +E++ ++  +Y  + IA  KL  G   E ++LL      +D +  ++  ++++YY VS+ Y+K   ++A++Y+  LLYL+   ++                    GD IYNFGELL HP+   L GT+ EWL+ ++ A N GDL  ++ L
Sbjct:   24 LQQSYILMEDLYERKLWKQLTDALIVF-----FDTPETVPLRLPLYTNFVNSFRPNINQLKAVYMGLKAFESCSNDEA-LRNLNQIVNEL---DEEKYKDAYVYSIVAIARIKLISGKLDEARELLVKASKIIDHIDYVESLIHSSYYSVSADYYKAKADYAQYYRHCLLYLSCIDLDKCSHTELVERAVDLSVAAILGD-IYNFGELLLHPVFELLVGTQHEWLHDLVIAMNVGDLPLFERL 256          
BLAST of CK934286 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.733e-23
Identity = 73/264 (27.65%), Postives = 125/264 (47.35%), Query Frame = 1
Query:  142 LESLRND-HPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKE--------EPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE-XXXXXXXXXXXXXXXXXXXXGDNIYNFGELLAHPIINSLTG-TKVEWLYYILQAFNSGDLVRYQELCRV 900
            L +LR +  P L   +      Y++KLW QL+  L +F   A  ++    ++LY NF++ F  KIN L +  + +   +   +   ++ YL+ +  + +  + +++         + IL I  +IA   L + D  + + LL+D + TLD    I   +  ++Y  +SQY KF  +F  FY  +LLYL+                          GD IYNFGELL HPI+ ++   +  +WL+ +L A   GD  ++  L +V
Sbjct:   11 LSTLRMEADPSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA--KSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKV 272          
The following BLAST results are available for this feature:
BLAST of CK934286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSD13_DICDI1.639e-3732.6926S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_RAT2.141e-3734.2626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_BOVIN2.141e-3734.6626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_HUMAN1.388e-3633.8626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_MOUSE2.367e-3633.8626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_CHICK6.888e-3633.8626S proteasome non-ATPase regulatory subunit 13 OS... [more]
RPN9_SCHPO4.188e-2530.04Probable 26S proteasome regulatory subunit rpn9 OS... [more]
RPN9_YEAST8.733e-2327.6526S proteasome regulatory subunit RPN9 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004261_A08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934286 ID=CK934286; Name=CK934286; organism=Citrus sinensis; type=EST; length=920bp
GGGGACATAAAAAAGGCACAACGAGAAACTGAGAGAGAAGGGTTTTTGAG
ATTGCTCTGATATTATAATAAATAAAGAGAAAAAAATCATATTTTTCTCT
AAATCTTGCACTGTCGCTTCGCCATGGCAGCTCTTCAGTACTTGGAATCT
TTGCGAAACGACCATCCGGAGCTGGGCGAGTGGTACAATGCTTTGGCAGA
TCTGTACCAGAAGAAGCTGTGGCACCAGCTCACCCTCAAGCTCGAACAGT
TCGTCGCTCACGCCGTCTTTCAGGCTGGTGATGCTCTGATTCAGTTGTAC
CACAACTTCATAACTGATTTTGAGACAAAGATCAATCTTCTCAAGCTTGC
ACATTTTGCTGTTATAGTTTCTCGGCAGTATCCTGAGAAGCAAGCTGCAA
TTAGTTATCTTGAGGGTGTGATTGAAAAACTCCGAGCAACTAATGAGCAG
CGTAAAGAAGAGCCAATCCTTTACATTAAGATGCAAATAGCCATGTTCAA
ACTTGAGCAAGGAGATAGAAAGGAGTGCAAAAAACTTCTCGAAGATGGAA
AGAGTACACTTGACAGCATGACTGACATTGATCCATCTGTGTATGCCAAC
TATTATTGGGTGTCATCTCAGTACCATAAATTTCACCAGGAATTTGCAGA
GTTCTACAAATGTGCTCTTCTTTATCTGGCATACACATCTGTGGAGTCTC
TCTCAGATTCATTCAAGCTGGATTTGGCATTTGATCTCTCCCTTTCTGCA
CTGCTGGGAGATAACATCTACAACTTTGGGGAACTGCTCGCACACCCTAT
TATAAATAGTCTTACAGGAACAAAGGTCGAGTGGCTTTACTATATTCTCC
AGGCATTCAACTCTGGTGACTTAGTTCGCTATCAAGAATTATGCCGTGTA
CACAATGCTGCTCTGAGAGC
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