CK934302

Overview
NameCK934302
Unique NameCK934302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1557 contig Csv1_Contig1557:61..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK934302 vs. ExPASy Swiss-Prot
Match: SYP52_ARATH (Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.165e-38
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 3 
Query:  303 ILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLG 485
            ILGTRLDSLQSLL K+PGKQ +SEKEMNRRKDM+ NLRSK NQ+AS LNMSNFANRDSL G
Sbjct:   52 ILGTRLDSLQSLLVKVPGKQHVSEKEMNRRKDMVGNLRSKTNQVASALNMSNFANRDSLFG 112

HSP 2 Score: 76.2554 bits (186), Expect = 2.165e-38
Identity = 34/51 (66.67%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  151 MASASDSWIKEYNEAIKLADDINGMISKRNSMPASGPESQRHASAIRRKIT 303
            MAS+SD W++EYNEA+KL++DINGM+S+RN+   +GP++QR ASAIRRKIT
Sbjct:    1 MASSSDPWMREYNEALKLSEDINGMMSERNASGLTGPDAQRRASAIRRKIT 51
[Close]
BLAST of CK934302 vs. ExPASy Swiss-Prot
Match: SYP51_ARATH (Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.609e-35
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 3 
Query:  303 ILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLG 485
            I G +LDSLQSLL+++ GK PISEKEMNRRKDM+ NLRSK NQMA+ LNMSNFANRDSLLG
Sbjct:   52 IFGNKLDSLQSLLAEIHGK-PISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLG 111

HSP 2 Score: 75.485 bits (184), Expect = 1.609e-35
Identity = 34/51 (66.67%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  151 MASASDSWIKEYNEAIKLADDINGMISKRNSMPASGPESQRHASAIRRKIT 303
            MAS+SDSW++ YNEA+KL+++INGMIS+R+S   +GP++QR ASAIRRKIT
Sbjct:    1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKIT 51
The following BLAST results are available for this feature:
BLAST of CK934302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SYP52_ARATH2.165e-3883.61Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 ... [more]
SYP51_ARATH1.609e-3578.69Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004260_G02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934302 ID=CK934302; Name=CK934302; organism=Citrus sinensis; type=EST; length=486bp
GGGGGAGGACGGGCCGTACAAAACCGGCAGTGTTGACGCTAATTCCCGTC
TTTTAGCTCGTTAATGCGACTTATCTTTGCTCCATCCTAAACTTCTCCAA
TCCAATCCCTCTCTCAGTCTACAATCCGAAATCTACCCATAATCTGTTCA
ATGGCTTCTGCTTCAGACTCGTGGATAAAGGAATACAATGAAGCAATAAA
ACTGGCAGATGATATTAATGGCATGATATCAAAACGAAATTCGATGCCCG
CATCTGGACCTGAATCCCAGCGTCATGCATCTGCCATACGGAGGAAGATT
ACATATTAGGAACCAGATTGGATAGCTTGCAGTCCCTTTTATCTAAGCTT
CCCGGGAAGCAGCCCATTTCGGAGAAAGAGATGAATCGTCGGAAGGACAT
GCTTGCTAATTTGAGATCCAAAGTGAATCAAATGGCTTCCACGTTGAACA
TGTCAAACTTTGCTAATAGGGATAGCCTGCTTGGAC
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