CK934308

Overview
NameCK934308
Unique NameCK934308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11469 contig Csv1_Contig11469:1..853. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK934308 vs. ExPASy Swiss-Prot
Match: HEBP2_HUMAN (Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.338e-22
Identity = 66/168 (39.29%), Postives = 88/168 (52.38%), Query Frame = 1 
Query:  223 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPPP--AKGLHPQQWKPTYAAVRQFSGFVSDSNIGEEAAALQASLAGTEWAAAIEKRHAEDSTSSYIVAQYNSPFEFYNRVNEIWLL 720
            +EIRHY  + W+STS ++ +    A +TGF +L  YIQGKNE E  I+MTAPV + V P  GPF ES+ T+S Y+P   Q +PP      +  +        VR F GF S     E+   L AS+   +     EK         Y  A YNSP +  NR NE+WL+
Sbjct:   38 YEIRHYGPAKWVSTS-VESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTL-ASILREDGKVFDEK--------VYYTAGYNSPVKLLNRNNEVWLI 195
[Close]
BLAST of CK934308 vs. ExPASy Swiss-Prot
Match: HEBP2_MOUSE (Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.587e-21
Identity = 62/168 (36.90%), Postives = 90/168 (53.57%), Query Frame = 1 
Query:  223 FEIRHYNSSMWMSTSPIQDISLVQATRTGFLQLFDYIQGKNEYEQTIEMTAPVITEVLPSDGPFCESSFTVSFYVPKVNQANPP-PAKG-LHPQQWKPTYAAVRQFSGFVSDSNIGEEAAALQASLAGTEWAAAIEKRHAEDSTSSYIVAQYNSPFEFYNRVNEIWLL 720
            +EIRHY  + W+ST  ++ +    A +TGF +L  YIQGKNE E  I++TAPV + V P   PF ES+ T+S Y+P   Q +PP P++  +  +        VR F GF S     E+   L A++   E     EK         +  A Y+SPF+  +R NE+WL+
Sbjct:   38 YEIRHYGPAKWVSTC-VESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRPSESDVFIEDRAEMTVFVRSFDGFSSGQKNQEQLLTL-ANILREEGKVFNEK--------VFYTAGYSSPFQLLDRNNEVWLI 195
The following BLAST results are available for this feature:
BLAST of CK934308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HEBP2_HUMAN1.338e-2239.29Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE... [more]
HEBP2_MOUSE9.587e-2136.90Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004260_G12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934308 ID=CK934308; Name=CK934308; organism=Citrus sinensis; type=EST; length=857bp
GCGGGGGATTATCATCACCATCGAGCACCCAGAAGTCTCTCCACTCAAAA
AACAAAAATGGCTGCAGGCTTGAGCATGTTAAAGTTTTCAGTTCTTCTCG
GCCTACTCTCAAATCTGAACTTGGGTTTATGGCCTGAATCTTCAAAGGGG
TTGAAAATATTTCCACCAACATGCAACAGAATTGAGTGTCCAAGCTTTGA
GACCGTTCATGTTGGCAATGGCTTTGAAATTCGTCACTATAATTCGTCCA
TGTGGATGTCTACTTCCCCTATTCAAGATATCTCTCTAGTTCAAGCTACC
AGAACTGGCTTTCTCCAGCTATTTGATTACATTCAAGGAAAGAACGAATA
TGAGCAAACAATAGAGATGACAGCTCCAGTAATCACTGAAGTTTTACCAA
GTGATGGACCCTTCTGTGAATCTTCATTCACCGTTAGCTTTTACGTCCCA
AAGGTGAACCAAGCCAACCCACCTCCAGCAAAAGGCCTCCATCCCCAACA
ATGGAAACCAACGTACGCGGCTGTGAGACAGTTCAGCGGGTTTGTATCAG
ACTCGAACATTGGTGAAGAAGCCGCTGCATTGCAAGCCAGCCTTGCAGGC
ACTGAATGGGCTGCAGCCATTGAGAAAAGACATGCAGAAGACTCCACTTC
AAGTTACATTGTTGCACAGTATAACTCTCCCTTTGAATTTTACAACAGAG
TGAATGAGATATGGCTTTTGTTTGATTTGGAAGAAGGGTTTGCAATTTGA
GTTTGCAAATCTGGTTTGTAATGAAGAACTAAGTGGAGAGAAAATCAGTA
GATGGNNNNTGCTTTATACGGTNAATGTAATAATCGTTTTGCATTGTCAT
ATGAAAT
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