CK934375

Overview
NameCK934375
Unique NameCK934375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:262..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934375 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 336.265 bits (861), Expect = 9.830e-92
Identity = 173/233 (74.25%), Postives = 197/233 (84.55%), Query Frame = 3 
Query:   15 SLPEFSSHAFRARYSPSSLTSLPRT---RYRRSCVSKTEAVKVLSMAKSTVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLV 704
            S+P  SS  FR+  S S+    P     + RR  V+ + A     +   TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLV
Sbjct:   32 SVPRSSSLQFRSLVSDSTSICGPSKFTGKNRRVSVTVSAAATTEPL---TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLV 261
[Close]
BLAST of CK934375 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.427e-82
Identity = 149/184 (80.98%), Postives = 164/184 (89.13%), Query Frame = 3 
Query:  153 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLV 704
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AGVK IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLV
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLV 189
The following BLAST results are available for this feature:
BLAST of CK934375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2766_ARATH9.830e-9274.25Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH2.427e-8280.98Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004259_H03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934375 ID=CK934375; Name=CK934375; organism=Citrus sinensis; type=EST; length=705bp
GGGGATTCCTCAACAGCCTTCCAGAATTTTCTTCTCACGCTTTCCGCGCT
CGCTATTCTCCTTCTTCACTAACATCACTTCCGAGAACGAGATACCGAAG
GAGTTGCGTCAGTAAAACCGAAGCAGTCAAAGTTTTATCGATGGCTAAGA
GTACCGTTCTTGTCACCGGCGCTGGTGGTCGAACCGGTCAAATAGTTTAT
AAGAAATTAAAGGAGAGGTCAGAGCAATATGCTGCTAGAGGTTTGGTCAG
AACTGAGGAGAGCAAGCAGAAAATTGGCGGAGCAGATGATCTTTTTATTG
GTGACATAAGGGACTCTAATAGCATCATTCCTGCAATCCAAGGAATCGAT
GCTCTCATAATTCTCACAAGTGCAGTACCAAAGATGAAACCTGATTTTGA
TCCTGCCAAAGGTGGAAGGCCTGAGTTCTACTTTGAAGAGGGTGCATATC
CTGAACAGGTTGATTGGATTGGTCAGAAAAATCAAATTGATGCTGCTAAG
GCTGCTGGAGTGAAGCAAATTGTGTTGGTTGGATCGATGGGAGGAACAAA
TCTTAATCATCCCTTGAACAGTTTGGGCAATGGCAATATATTGGTTTGGA
AAAGAAAGGCTGAGCAATATTTGGCTGACTCTGGTATTCCATACACAATT
ATAAGGGCCGGAGGCCTTCAGGATAAAGAAGGTGGTATCCGAGAATTGCT
TGTCG
back to top