CK934395

Overview
NameCK934395
Unique NameCK934395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4574 contig Csv1_Contig4574:526..1249. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_CITSI (DNA-directed RNA polymerase subunit beta OS=Citrus sinensis GN=rpoB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_TOBAC (DNA-directed RNA polymerase subunit beta OS=Nicotiana tabacum GN=rpoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN G+STIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SOLTU (DNA-directed RNA polymerase subunit beta OS=Solanum tuberosum GN=rpoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN G+STIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SOLLC (DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum GN=rpoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN G+STIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_SOLBU (DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum GN=rpoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN G+STIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_NICTO (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis GN=rpoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN G+STIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_NICSY (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris GN=rpoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN G+STIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_ATRBE (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna GN=rpoB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.564e-18
Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN G+STIPG NQIQFEGFCRFIDQGLTEELYKFPKIEDTD
Sbjct:    1 MLGDGNEGISTIPGFNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 45
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_JASNU (DNA-directed RNA polymerase subunit beta OS=Jasminum nudiflorum GN=rpoB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.348e-18
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN GMSTIPGLNQIQFEGFCRFIDQGLTEEL KFPKIEDTD
Sbjct:    1 MLGDGNEGMSTIPGLNQIQFEGFCRFIDQGLTEELSKFPKIEDTD 45
[Close]
BLAST of CK934395 vs. ExPASy Swiss-Prot
Match: RPOB_EUCGG (DNA-directed RNA polymerase subunit beta OS=Eucalyptus globulus subsp. globulus GN=rpoB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.459e-18
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 3 
Query:  588 MLGDGNAGMSTIPGLNQIQFEGFCRFIDQGLTEELYKFPKIEDTD 722
            MLGDGN GMSTIPG NQIQFEGFCRFIDQGLTEEL KFPKIEDTD
Sbjct:    1 MLGDGNEGMSTIPGFNQIQFEGFCRFIDQGLTEELIKFPKIEDTD 45
The following BLAST results are available for this feature:
BLAST of CK934395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RPOB_CITSI7.969e-20100.00DNA-directed RNA polymerase subunit beta OS=Citrus... [more]
RPOB_TOBAC2.564e-1893.33DNA-directed RNA polymerase subunit beta OS=Nicoti... [more]
RPOB_SOLTU2.564e-1893.33DNA-directed RNA polymerase subunit beta OS=Solanu... [more]
RPOB_SOLLC2.564e-1893.33DNA-directed RNA polymerase subunit beta OS=Solanu... [more]
RPOB_SOLBU2.564e-1893.33DNA-directed RNA polymerase subunit beta OS=Solanu... [more]
RPOB_NICTO2.564e-1893.33DNA-directed RNA polymerase subunit beta OS=Nicoti... [more]
RPOB_NICSY2.564e-1893.33DNA-directed RNA polymerase subunit beta OS=Nicoti... [more]
RPOB_ATRBE2.564e-1893.33DNA-directed RNA polymerase subunit beta OS=Atropa... [more]
RPOB_JASNU3.348e-1895.56DNA-directed RNA polymerase subunit beta OS=Jasmin... [more]
RPOB_EUCGG7.459e-1893.33DNA-directed RNA polymerase subunit beta OS=Eucaly... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934395 ID=CK934395; Name=CK934395; organism=Citrus sinensis; type=EST; length=724bp
GGGTGCAATAAAGGGGGGCGATGTATATATAGATAGCTATATCGGCACGG
GTTTACTAAATACAAGCCGTCTTACGCACTTCAATCCTATTCTAAAAATT
CGACTAAAAAAATAAAAAGGGGGTTCTTCGCAAATCATTTTTTGAACAGT
GGAATCCACGAAAAAGGTAAGTGCTAAAAAAATGAGCTTTACGCTGGTAT
ATTGTGTCTGATTCTTATGTCTTTATCTTAGCGAATAGATCAAATCACGA
CGTTTATTTTTCTGGTATCCTAACGGATTGGAATATCATAATAATGGTAT
AAATTGAATTATTTTTTTGATTCTATACAAAACTCCGTAAGTCTAAGTGG
AATTTATCGCTTCCTTTCCATTTGGATCTGTCTCTTAGAAATTCCAATTT
TATTAAGTATAAAATCATCCTTTTTCCCCCGTTCATACGTATTTCATACA
TTCCATCTATATGGAGTTGGGTAAAATTTCATGCGATTCAGTAAACAGAA
TCTAAATTCCAGCATTCTGCATCGAATCATATGAATCGATGCAGAATGAG
AAACGAATGGGATTTTTTGATAAATGGGAAATTCAAAATGCTCGGAGATG
GAAATGCAGGAATGTCTACAATACCTGGGTTGAATCAGATACAATTTGAA
GGATTTTGTAGGTTCATTGATCAGGGCTTAACAGAAGAGCTTTATAAGTT
TCCAAAAATTGAAGATACAGATTA
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