CK934396

Overview
NameCK934396
Unique NameCK934396
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC5_PAPSO (Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferum GN=TYDC5 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.934e-58
Identity = 111/173 (64.16%), Postives = 136/173 (78.61%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYV--NCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 521
            +LST+PE  KNKAT+S QV+DYKDWQI LSRRFRS+KLW V+R+YGVANLR FLRSHV MAK F+ L++ DKRFEIV P  FA+VCFR+ P+ +   KL    V  NC+   EE+ NE N +LLES+NASG  YMTHAV+GG+Y IRFA GATLTE+RHV +AW V+Q+H +A
Sbjct:  343 ALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMKLWLVLRSYGVANLRSFLRSHVKMAKHFDGLIAMDKRFEIVVPNTFAMVCFRLKPAAIFNGKLGENGVDYNCI---EEKTNEINSKLLESVNASGSIYMTHAVVGGVYMIRFAVGATLTEERHVSMAWKVIQEHTDA 512          
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC1_PAPSO (Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferum GN=TYDC1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.107e-55
Identity = 108/176 (61.36%), Postives = 133/176 (75.57%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKL-KTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQSA 533
            +LST+PE  KNKAT+S QV+DYKDWQI LSRRFRS+KLW V+R+YG+ANLR FLRSHV MAK F+ L+  D RFEIV P  FA+VCFR+ P+ +   K+ +  ++      E Q NE N +LLES+NASGK YMTHAV+GG+Y IRFA GATLTE+RHV  AW VVQ+H +A   A
Sbjct:  343 ALSTSPEYLKNKATDSKQVIDYKDWQIALSRRFRSMKLWLVLRSYGIANLRTFLRSHVKMAKHFQGLIGMDNRFEIVVPRTFAMVCFRLKPAAIFRKKIVEDDHI------EAQTNEVNAKLLESVNASGKIYMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEHTDAILGA 512          
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC2_PAPSO (Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferum GN=TYDC2 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.685e-51
Identity = 103/184 (55.98%), Postives = 128/184 (69.57%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVN-----CLLSEEEQI---NEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQSAF 536
            +LSTNPE  +NKATES QVVDYKDWQI LSRRFRSLKLW V+R+YGV NLR+FLRSHV MAK FE L+  D RFEI  P  FA+VCFR+ P   +       + N      L  E E +   N+ N+  LE++NA+G  YMTHAV+GG+Y IRFA G+TLTE+RHV+ AW ++Q+H +     F
Sbjct:  341 ALSTNPEYLRNKATESRQVVDYKDWQIALSRRFRSLKLWMVLRSYGVTNLRNFLRSHVKMAKTFEGLICMDGRFEITVPRTFAMVCFRLLPPKTIKVYDNGVHQNGNGVVPLRDENENLVLANKLNQVYLETVNATGSVYMTHAVVGGVYMIRFAVGSTLTEERHVIYAWKILQEHADLILGKF 524          
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC3_PETCR (Tyrosine decarboxylase 3 OS=Petroselinum crispum GN=TYRDC-3 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.072e-50
Identity = 101/179 (56.42%), Postives = 126/179 (70.39%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA-FQSAFKP 542
            SLST PE  KN A+E+ +VVDYKDWQI LSRRFR+LKLWFV+R+YGV  LR F+R HV MAK FE LV  DKRFE+V P  F++VCFR+ PS ++             ++E ++NE NR+LLES+N SG+ Y++H VLGGIY IRFA G TLT+  HV  AW V+Q H +A    AF P
Sbjct:  341 SLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFRIKPSAMIGK-----------NDENEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHADALLDDAFLP 508          
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC3_PAPSO (Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferum GN=TYDC3 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.072e-50
Identity = 101/186 (54.30%), Postives = 129/186 (69.35%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVL-------MDKLKTKYVNCLLSEEEQI---NEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAFQSAF 536
            +LSTNPE  +NKATES QVVDYKDWQI L RRFRS+KLW V+R+YGV NLR+FLRSHV MAK FE LV  D+RFEI  P  FA+VCFR+ P   +       + +     +  L +E E++   N+ N+  L  + A+G  YMTHAV+GG+Y IRFA G+TLTE+RHV+ AW V+Q+H +   S F
Sbjct:  341 ALSTNPEYLRNKATESRQVVDYKDWQIALIRRFRSMKLWMVLRSYGVTNLRNFLRSHVRMAKTFEGLVGADRRFEITVPRTFAMVCFRLLPPTTVKVCGENGVHQNGNGVIAVLRNENEELVLANKLNQVYLRQVKATGSVYMTHAVVGGVYMIRFAVGSTLTEERHVIHAWEVLQEHADLILSKF 526          
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC4_PETCR (Tyrosine decarboxylase 4 OS=Petroselinum crispum GN=TYRDC-4 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.400e-50
Identity = 98/171 (57.31%), Postives = 124/171 (72.51%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 521
            SLST PE  KN A+E+ +VVDYKDWQI LSRRFR+LKLWFV+R+YGV  LR F+R HV MAK FE LV  DKRFE+V P  F++VCFR+ PS ++             ++E+++NE NR+LLES+N SG+ Y++H VLGGIY IRFA G TLT+  HV  AW V+Q H +A
Sbjct:  340 SLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVGLDKRFEVVAPRLFSMVCFRIKPSAMIGK-----------NDEDEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHADA 499          
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC2_PETCR (Tyrosine decarboxylase 2 OS=Petroselinum crispum GN=TYRDC-2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.389e-50
Identity = 98/171 (57.31%), Postives = 124/171 (72.51%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEA 521
            SLST PE  KN A+E+ +VVDYKDWQI LSRRFR+LKLWFV+R+YGV  LR F+R HV MAK FE LV+ DKRFE+V P  F++VCFR+ PS ++             ++E+++NE NR+LLES+N SG+ Y++H VLGGIY IRFA G TLT+  HV  AW V+Q H  A
Sbjct:  339 SLSTYPEFLKNNASETNKVVDYKDWQIMLSRRFRALKLWFVLRSYGVGQLREFIRGHVGMAKYFEGLVNMDKRFEVVAPRLFSMVCFRIKPSAMIGK-----------NDEDEVNEINRKLLESVNDSGRIYVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHAGA 498          
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC2_ARATH (Probable tyrosine decarboxylase 2 OS=Arabidopsis thaliana GN=At4g28680 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.647e-41
Identity = 82/172 (47.67%), Postives = 116/172 (67.44%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQHLEAF 524
            +L TNPE  + K ++   VV+YKDWQI+LSRRFRSLKLW V+R YG  NLR+F+R HVN+AK FE  V+ D  FE+V   +F++VCFR++P               +  +E+Q NE NRELL ++N++GK +++H  L G + +RFA GA LTE++HV  AW ++Q+H   F
Sbjct:  383 ALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAP---------------VDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKF 539          
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC1_ARATH (Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 84/167 (50.30%), Postives = 113/167 (67.66%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQQ 509
            +LSTNPE  KNKA+++  VVDYKDWQI L RRFRSLKLW V+R YG   L+ ++R+H+ +AK FE+LVS D  FEIV P  FA+VCFR+ P               +  EE++ N  NRELL+++N+SGK +M+H  L G   +R A GA LTE++HV  AW ++Q+
Sbjct:  331 ALSTNPEFLKNKASQANLVVDYKDWQIPLGRRFRSLKLWMVLRLYGSETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVP---------------VKDEEKKCNNRNRELLDAVNSSGKLFMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQE 482          
BLAST of CK934396 vs. ExPASy Swiss-Prot
Match: TYDC1_ORYSJ (Tyrosine decarboxylase 1 OS=Oryza sativa subsp. japonica GN=Os07g0437500 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.112e-39
Identity = 78/166 (46.99%), Postives = 113/166 (68.07%), Query Frame = 3
Query:    9 SLSTNPEXXKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKRFEIVFPCHFAVVCFRVSPSPVLMDKLKTKYVNCLLSEEEQINEFNRELLESINASGKAYMTHAVLGGIYAIRFATGATLTEKRHVVVAWTVVQ 506
            SLSTNPE  KNKA+++  VVD+KDWQI L RRFRSLKLW V+R YGV NL+ ++R H+++A+ FE+L+  D RFE+V P  F++VCFR+ P                 S+ E   + N ++++ +N+SGK +++H VL G + +RFA GA LTE+RHV  AW +++
Sbjct:  336 SLSTNPEFLKNKASQANSVVDFKDWQIPLGRRFRSLKLWMVLRLYGVDNLQSYIRKHIHLAEHFEQLLLSDSRFEVVTPRTFSLVCFRLVPP---------------TSDHENGRKLNYDMMDGVNSSGKIFLSHTVLSGKFVLRFAVGAPLTEERHVDAAWKLLR 486          
The following BLAST results are available for this feature:
BLAST of CK934396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
TYDC5_PAPSO6.934e-5864.16Tyrosine/DOPA decarboxylase 5 OS=Papaver somniferu... [more]
TYDC1_PAPSO1.107e-5561.36Tyrosine/DOPA decarboxylase 1 OS=Papaver somniferu... [more]
TYDC2_PAPSO3.685e-5155.98Tyrosine/DOPA decarboxylase 2 OS=Papaver somniferu... [more]
TYDC3_PETCR1.072e-5056.42Tyrosine decarboxylase 3 OS=Petroselinum crispum G... [more]
TYDC3_PAPSO1.072e-5054.30Tyrosine/DOPA decarboxylase 3 OS=Papaver somniferu... [more]
TYDC4_PETCR1.400e-5057.31Tyrosine decarboxylase 4 OS=Petroselinum crispum G... [more]
TYDC2_PETCR2.389e-5057.31Tyrosine decarboxylase 2 OS=Petroselinum crispum G... [more]
TYDC2_ARATH2.647e-4147.67Probable tyrosine decarboxylase 2 OS=Arabidopsis t... [more]
TYDC1_ARATH5.897e-4150.30Tyrosine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
TYDC1_ORYSJ1.112e-3946.99Tyrosine decarboxylase 1 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_E07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934396 ID=CK934396; Name=CK934396; organism=Citrus sinensis; type=EST; length=696bp
GCGGGAGCTCACTCTCAACAAATCCTGAGTANNNGAAGAACAAAGCCACC
GAGTCGATGCAAGTGGTGGATTACAAAGATTGGCAAATAACTCTGAGTCG
AAGATTTCGTTCGCTGAAACTATGGTTTGTGATAAGAAACTATGGCGTGG
CAAATCTAAGGCACTTCCTTCGCAGCCATGTAAACATGGCCAAGCTTTTT
GAAAGGCTTGTAAGCGGTGATAAGAGGTTTGAAATTGTGTTTCCCTGTCA
TTTTGCCGTGGTCTGCTTTAGGGTTTCGCCATCACCAGTACTCATGGATA
AACTTAAAACCAAATACGTAAATTGTCTGCTCTCAGAGGAGGAACAAATA
AACGAATTCAATCGAGAATTACTGGAGTCGATTAATGCATCTGGAAAAGC
ATACATGACACATGCCGTTTTGGGAGGAATCTACGCCATACGATTTGCCA
CTGGTGCTACGTTGACAGAGAAACGACACGTAGTGGTGGCGTGGACGGTG
GTGCAACAGCACTTGGAAGCTTTTCAAAGTGCATTTAAACCCTAAGTTAT
GGTATTATGTAATATTTATGTCCCTTTTTAATTTTGAAATTATTGTTTTA
TTATATCACAAAACTGCATCACTTATTTTAAAGGAGAATAATAATAACAG
GAAAATAATGACGTNNNNGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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