CK934398

Overview
NameCK934398
Unique NameCK934398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11434 contig Csv1_Contig11434:1008..1549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK934398 vs. ExPASy Swiss-Prot
Match: YBDL_ECOLI (Aminotransferase ybdL OS=Escherichia coli (strain K12) GN=ybdL PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:   11 YYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFYLNPEDGKNLVRFTFCKDEGTLRSAVDRM 304
            +Y  L   Y  K+ ILV  LN    ++ P  GTYF++VD++      D+ FC++L +E GV AIP SVF  +P   K L+R  F K E TL +A +R+
Sbjct:  287 HYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHK-LIRLCFAKKESTLLAAAERL 383
The following BLAST results are available for this feature:
BLAST of CK934398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YBDL_ECOLI4.081e-1340.82Aminotransferase ybdL OS=Escherichia coli (strain ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004259_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934398 ID=CK934398; Name=CK934398; organism=Citrus sinensis; type=EST; length=542bp
GGGGGAGACGTACTATGAGGAGCTAAAGAGAGATTACTCGGCAAAGAAGG
CAATTTTGGTGGAGGGATTGAATGCTGTTGGTTTCAAGGTATTCCCATCT
AGTGGGACGTACTTTGTGGTTGTAGATCACACCCCATTTGGGCACGAAAC
TGATATTGCATTTTGTGAATATCTGATCAAGGAAGTTGGGGTTGTGGCAA
TTCCGACCAGCGTATTTTACTTGAATCCAGAGGATGGAAAGAATTTGGTG
AGATTTACCTTCTGCAAAGATGAAGGAACTTTGAGGTCTGCAGTTGACAG
GATGAAGGAGAAGCTGAGGAGAAAATGATCAAAGTGAGTGCTAAAGGCTA
TTTTATTTGAATCAGTTGATGTAGTGGATTAAAGATTTGAGTAGTGTGAT
GTTAAGCATGTGGGGATAAATGGTAGGTACTATCCCGACAATTTGAAGAC
AAACTACCATACTTATGAATGAATCAAATTATTTGAAAAAAAAAAAAAAA
AAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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