CK934417

Overview
NameCK934417
Unique NameCK934417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934417_ssr250 microsatellite CK934417_ssr250:250..261. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1684 contig Csv1_Contig1684:1..365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_CICAR (Trans-cinnamate 4-monooxygenase OS=Cicer arietinum GN=CYP73A19 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.600e-29
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            IT+SKLRGKR              NWLQVGDDLNHRNL+DLAK++GD+ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRT+NVV
Sbjct:   21 ITISKLRGKRFKLPPGPIPVPVFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.089e-29
Identity = 64/86 (74.42%), Postives = 70/86 (81.40%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            I VSKLRGKR              NWLQVGDDLNHRNL+DLAKK+GD+LLLRMGQRNLVVVSSP+ +KEVLHTQGVEFGSRT+NVV
Sbjct:   21 ILVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDILLLRMGQRNLVVVSSPELSKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.089e-29
Identity = 64/86 (74.42%), Postives = 69/86 (80.23%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            I VSKLRGKR              NWLQVGDDLNHRNL+DLAKK+GD+ LLRMGQRNLVVVSSPD +KEVLHTQGVEFGSRT+NVV
Sbjct:   21 ILVSKLRGKRFKLPPGPLPVPVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.939e-29
Identity = 63/86 (73.26%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            I VSKLRGKR              NWLQVGDDLNHRNL+ LAK++GD+ LLRMGQRNLVVVSSPD AKEVLHTQGVEFGSRT+NVV
Sbjct:   21 IVVSKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.354e-28
Identity = 61/86 (70.93%), Postives = 69/86 (80.23%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            I +SKLRG+R              NWLQVGDDLNHRNL+DLAK++GD+ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRT+NVV
Sbjct:   21 IAISKLRGRRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.769e-28
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            I +SKLRGKR              NWLQVGDDLNHRNL+DLAKK+G++ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRT+NVV
Sbjct:   21 IFISKLRGKRFKLPPGPVPVPIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPNLAKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_HELTU (Trans-cinnamate 4-monooxygenase OS=Helianthus tuberosus GN=CYP73A1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.769e-28
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            I +SKLRGK+              NWLQVGDDLNHRNL+DLAK++G++LLLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRT+NVV
Sbjct:   21 ILISKLRGKKFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGEILLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.146e-28
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            I VS LRG++              NWLQVGDDLNHRNL+DLAKK+GD+ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRT+NVV
Sbjct:   21 IAVSTLRGRKFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.721e-28
Identity = 61/84 (72.62%), Postives = 67/84 (79.76%), Query Frame = 3
Query:  114 VSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            VSKLRGK+              NWLQVGDDLNHRNLSD AKK+G++ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRT+NVV
Sbjct:   23 VSKLRGKKFKLPPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVV 106          
BLAST of CK934417 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.690e-27
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = 3
Query:  108 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTKNVV 365
            I VSKLRGKR              NWLQVGDDLN R L++L+KK+GDV LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRT+NVV
Sbjct:   21 IAVSKLRGKRFKLPPGPLGFPVFGNWLQVGDDLNQRKLANLSKKFGDVYLLRMGQRNLVVVSSPEMAKEVLHTQGVEFGSRTRNVV 106          
The following BLAST results are available for this feature:
BLAST of CK934417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TCMO_CICAR1.600e-2973.26Trans-cinnamate 4-monooxygenase OS=Cicer arietinum... [more]
TCMO_POPTM2.089e-2974.42Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
TCMO_POPKI2.089e-2974.42Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
TCMO_PHAAU7.939e-2973.26Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
TCMO_GLYEC1.354e-2870.93Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
TCMO_ZINEL1.769e-2872.09Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_HELTU1.769e-2870.93Trans-cinnamate 4-monooxygenase OS=Helianthus tube... [more]
TCMO_SOYBN5.146e-2870.93Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_CATRO6.721e-2872.62Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
TCMO_RUTGR5.690e-2770.93Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004259_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934417 ID=CK934417; Name=CK934417; organism=Citrus sinensis; type=EST; length=365bp
GGGGCACCCACTTGAGCTTCCCTGTATTCATTACGTTTATCGTAAACATG
GATCTCCTCTTGCTGGAAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGT
TGTCGCCATTACCGTCTCTAAACTCCGCGGAAAGCGCTTCAAGCTTCCCC
CCGGCCCCCTCCCCGTCCCCGTCTTCGGCAACTGGCTCCAGGTCGGCGAT
GACTTGAACCATCGGAACCTCTCCGACTTAGCCAAGAAATATGGAGATGT
CCTCCTCCTCCGCATGGGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGG
ACCACGCCAAGGAGGTCCTGCACACGCAGGGAGTGGAGTTCGGATCACGA
ACGAAGAACGTCGTG
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