CK934472

Overview
NameCK934472
Unique NameCK934472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934472_ssr555 microsatellite CK934472_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:433..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.177e-53
Identity = 98/115 (85.22%), Postives = 106/115 (92.17%), Query Frame = 2
Query:    5 TPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFF*SSGLGR*PGKES 349
            TP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFF   GL   P K++
Sbjct:  119 TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKA 233          

HSP 2 Score: 125.176 bits (313), Expect = 3.129e-28
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 3
Query:  306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 509
            FFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  219 FFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.107e-52
Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = 2
Query:    5 TPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFF*SSGLGR*PGK 343
            TP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFF   GL   P K
Sbjct:  122 TPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 234          

HSP 2 Score: 128.257 bits (321), Expect = 3.696e-29
Identity = 62/68 (91.18%), Postives = 63/68 (92.65%), Query Frame = 3
Query:  306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 509
            FFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:  222 FFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.485e-49
Identity = 94/113 (83.19%), Postives = 100/113 (88.50%), Query Frame = 2
Query:    5 TPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFF*SSGLGR*PGK 343
            TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +F   GL   P K
Sbjct:  123 TPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEK 234          

HSP 2 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 3
Query:  306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 461
            +FDPLGLAADPEK  TL+LAEIKH+RLAMVAFL FA+QA  TGKGP++  AT
Sbjct:  222 YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 6.341e-45
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 2
Query:   11 LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKF 307
            L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWIEV+++G  EF RNSE +PEKR YPGG F
Sbjct:  121 LAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVF 218          

HSP 2 Score: 57.7658 bits (138), Expect = 6.341e-45
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  309 FDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 458
            FDPL LA++ E++A  L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A
Sbjct:  218 FDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.837e-28
Identity = 42/93 (45.16%), Postives = 60/93 (64.52%), Query Frame = 2
Query:   38 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKF 307
            L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F
Sbjct:   81 LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF 173          

HSP 2 Score: 68.5514 bits (166), Expect = 2.837e-28
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 506
            FDPLG + DP K   L++ EIK+ RLA++A +GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:  173 FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.213e-23
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 494
            FDPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP    +L
Sbjct:  206 FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          

HSP 2 Score: 50.447 bits (119), Expect = 5.213e-23
Identity = 32/99 (32.32%), Postives = 53/99 (53.54%), Query Frame = 2
Query:   44 RFRECELIHGRWAMLATLGALTVEWLT--------GITWQDAGKVELVEGS--SYLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKF 307
            +++  ELIH RWAML   G +  E L            W   G + L++G+  +Y G+ +P ++   +  EV+++G  E+ R  + LD E +L+PGG F
Sbjct:  109 KYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF 206          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.443e-22
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  195 FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          

HSP 2 Score: 46.9802 bits (110), Expect = 9.443e-22
Identity = 39/103 (37.86%), Postives = 50/103 (48.54%), Query Frame = 2
Query:   44 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQRNSELDP----EKRLYPGGKF 307
            R RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R +   P    E  LYPGG F
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF 195          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.230e-21
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 476
            FDPLGLA DP+  A L++ EIK+ RLAM + LGF VQA+VTGKGP+ N   HL+DP
Sbjct:  182 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237          

HSP 2 Score: 51.2174 bits (121), Expect = 1.230e-21
Identity = 41/105 (39.05%), Postives = 53/105 (50.48%), Query Frame = 2
Query:   44 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR---NSE--LDPEKRLYPGGKF 307
            R+RE ELIH RWA+L  LG LT E L+   G+      W  AG     +G  +YLG        SI   + ++V+++G  E  R    SE  LD    LYPGG F
Sbjct:   78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF 182          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.599e-21
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE+ A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  193 FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          

HSP 2 Score: 45.0542 bits (105), Expect = 1.599e-21
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPL---PFSITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      SI ++   +V+++G +E  R         +DP   LYPGG F
Sbjct:   94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSF 193          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.599e-21
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  190 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 247          

HSP 2 Score: 46.9802 bits (110), Expect = 1.599e-21
Identity = 38/103 (36.89%), Postives = 50/103 (48.54%), Query Frame = 2
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F
Sbjct:   91 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF 190          
The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB4B_ARATH8.177e-5385.22Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_ARATH3.107e-5285.84Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4C_ARATH5.485e-4983.19Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE6.341e-4570.71Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC2.837e-2845.16Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB26_ARATH5.213e-2361.29Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_SINAL9.443e-2263.79Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_DUNTE1.230e-2162.50Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_APIGR1.599e-2162.07Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ1.599e-2163.79Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bp
GGGCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCC
GTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACTCTCGGT
GCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAA
GGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCT
CAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAG
TTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGG
AAAGTTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCC
ACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATT
CCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACA
ACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACC
TTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACT
ATTGTTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTTATAACGT
TTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTAAAGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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