CK934501

Overview
NameCK934501
Unique NameCK934501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:18..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 2.656e-100
Identity = 183/217 (84.33%), Postives = 194/217 (89.40%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSKLQS+A+REA+SSI+ + KETK RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PRPKMK+CMLGDAQHVEEAEKIGL+ MDVE                  +HAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP NR+F
Sbjct:    1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.781e-96
Identity = 181/217 (83.41%), Postives = 190/217 (87.56%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSKLQS+A+REA+++I   S E KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL+ MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:    1 MSKLQSEAVREAITTITGKS-EAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.970e-95
Identity = 178/217 (82.03%), Postives = 190/217 (87.56%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSKLQS+A+REA+++I   S+E KKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL  MDVE                  YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ+FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP  RIF
Sbjct:    1 MSKLQSEAVREAITTIKGKSEE-KKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 3.383e-71
Identity = 131/216 (60.65%), Postives = 165/216 (76.39%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            SK+  D L E V+ +++ S + KKR F ET+ELQIGLKNYDPQKDKRFSG+VKL HIPRPKMKVC+LGD QH +EA+   +D+MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K+ E K+T+KFQ+KKVLC+ VAVG++ M+  ++ QNV +S+NFLVSLLKKNWQNVR L++KS+MGP  R++
Sbjct:    3 SKVSRDTLYEGVNGLLEASAK-KKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLVKKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGPPQRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.844e-71
Identity = 131/216 (60.65%), Postives = 167/216 (77.31%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            SK+  D L E V++++Q SK+ KKRNF ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ + +  MD E                  Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K++E KAT+KFQ+KKVLC+ VAVG++ M   ++ QNV +S+NFLVSLLKK+WQNVR L++KSTMGP  +++
Sbjct:    3 SKVSRDTLYECVNAVLQASKD-KKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKSLTVPCMDAEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPPKLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.203e-68
Identity = 126/216 (58.33%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            SK+  D L EAV  ++Q SK+ KKR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  +C+LGD QH +EA+ + L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ + E+++  N+ +S+NFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:    3 SKVSRDTLYEAVREVLQGSKK-KKRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSLCVLGDQQHCDEAKAVDLPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.572e-68
Identity = 128/217 (58.99%), Postives = 159/217 (73.27%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSK+  D L EAV   VQ     KKR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+   L +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E+++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:    1 MSKVSRDTLYEAVKE-VQAGSRRKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAELPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 216          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.019e-67
Identity = 121/217 (55.76%), Postives = 162/217 (74.65%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSK+   A+R+ V+ +++YS ETKKRNF ET+ELQIGLKNYDPQ+DKRFSG+++LP IPRP M +C+LGD   ++ A+  G+D M V+                  Y AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H + L  K+NE K+T+KFQLKKVLCMGVAVGN+ M ++Q+  N+ +++N+LVSLLKK WQNV  L +K+TM P  R++
Sbjct:    1 MSKISVAAVRQHVTDLLEYSNETKKRNFLETVELQIGLKNYDPQRDKRFSGTIRLPSIPRPNMSICILGDQHDIDRAKHGGVDAMSVDDLKKLNKNKKLIKKLARKYDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSPPKRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.126e-66
Identity = 121/216 (56.02%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            SK+  D L EAV  ++ +  + K+R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.126e-66
Identity = 125/217 (57.60%), Postives = 159/217 (73.27%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSK+  D L EAV   VQ    +K+R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+   + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E ++  N+ ++VNFLVSLLKKNWQNVR LY+KS+MG   R++
Sbjct:    1 MSKVSRDTLYEAVRE-VQAGSISKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAEIPHMDIEALKKLNKNKKMVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLNTKVDEVKSTIKFQMKKVLCLAVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSSMGKPQRLY 216          
The following BLAST results are available for this feature:
BLAST of CK934501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
R10A3_ARATH2.656e-10084.3360S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH1.781e-9683.4160S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH1.970e-9582.0360S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
R10AB_DROME3.383e-7160.6560S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_SPOFR9.844e-7160.6560S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
RL10A_XENLA1.203e-6858.3360S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_DANRE4.572e-6858.9960S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
RL10A_NEUCR1.019e-6755.7660S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_RAT1.126e-6656.0260S ribosomal protein L10a OS=Rattus norvegicus GN... [more]
RL10A_ICTPU1.126e-6657.6060S ribosomal protein L10a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_D09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934501 ID=CK934501; Name=CK934501; organism=Citrus sinensis; type=EST; length=839bp
GGGGAGGGTTTCTTTTTCGTATTTGAAGAAAAAAAATTCTGTAAAGGGCT
CCAAGCGCTTCAATCATGAGTAAGCTTCAGAGTGATGCACTGAGAGAGGC
CGTCTCTAGTATTGTGCAATACTCTAAGGAGACAAAGAAGAGGAACTTCA
CCGAGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAG
GACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAA
GATGAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGA
AGATTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAG
AACAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGC
ATCAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCA
ACAAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAG
TCCAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGT
GCTTTGCATGGGAGTTGCTGTTGGAAACCTTTCAATGGAGGAGAAGCAGA
TCTTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAG
AAAAACTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCC
TTCAAACCGCATCTTTTAAAAATTCTGCTTTATGTTGGAGTTTTGTAGGG
ANNNCCTAGTGTGATCTTATTATACCCAAAATGTCTTTCTTTGAATGGTC
ACAACCTGCAATTTTCTTTTTCTTTTTCTTTTTCTTTTC
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