CK934514

Overview
NameCK934514
Unique NameCK934514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length561
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10848 contig Csv1_Contig10848:525..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934514 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.826e-29
Identity = 64/119 (53.78%), Postives = 73/119 (61.34%), Query Frame = 3
Query:   18 SGXFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXXGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 374
            SG  NRS S+VPR VLP + FA +G  V   VN  L  LQD++C G LKQ              GSCCNFLTVLYIGFV AHT+PVLYE++EDEVD             YKKLD+GFLS
Sbjct:  116 SGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLS 234          
BLAST of CK934514 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 39/115 (33.91%), Postives = 57/115 (49.57%), Query Frame = 3
Query:   30 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXXGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 374
            N++P K+P   +  E F  I + +   +N+A  +L+ I+ G  LK+              G+  NFLT++YI FV  HT+P+LYEKHED+VD             Y   D   LS
Sbjct:  127 NKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLS 241          
BLAST of CK934514 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 38/119 (31.93%), Postives = 57/119 (47.90%), Query Frame = 3
Query:   18 SGXFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXXGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 374
            S   ++SP  +P   +P +V   + + +   +N    +L+DI+ G  LK+              GS CNFLT++YI  V   T+PVLYEK+ED+VD             Y + D   LS
Sbjct:  119 STFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLS 237          
BLAST of CK934514 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.431e-11
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 3
Query:   30 NRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXXGSCCNFLTVLYIGFVAAHTLPVLYEKHEDEVDSXXXXXXXXXXXXYKKLDSGFLS 374
            N++  ++P   +P E F  + +++   +N+A  +L+ I+ G  LK+              G+  NFLT++YI FV  HT+P+LYEKHED+VD             Y   D   LS
Sbjct:  127 NKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLS 241          
The following BLAST results are available for this feature:
BLAST of CK934514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RTNLH_ARATH9.826e-2953.78Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.425e-1133.91Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.425e-1131.93Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH2.431e-1132.17Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_B07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934514 ID=CK934514; Name=CK934514; organism=Citrus sinensis; type=EST; length=561bp
GCCGGGGGTNNNNCATTTCGGGNNNATTTAACAGATCACCATCAAAAGTT
CCCCGCTTTGTTCTGCCTCCAGAGGTATTTGCTAACATTGGCACGACAGT
TTGTGCCAATGTTAACGAAGCTCTGGGGCTACTTCAGGACATTTCATGTG
GAGGAAAACTGAAACAACTTCTTGTGGCTGTAGCAAGCTTGTGGGCTGCT
GCTGTGGTAGGGAGCTGTTGTAACTTTTTGACCGTTCTATATATTGGTTT
TGTTGCTGCCCATACATTGCCAGTCCTGTATGAGAAGCATGAAGATGAAG
TTGACAGCTTTCTGAACAATGTCTTCCAGCAGCTCCAGAATCAGTACAAG
AAGCTTGATTCAGGTTTCCTCAGCAAAATCCCCAAGGGCAAGTTCAAAGG
GAAGAAAAGCGAATAGATCGATTGATCAAACATTAGATTTTACATTTCCC
CCTTGCCATGACTAGTGATGGAACGTAACGACAACATTGTCATATTATTA
ATGTTAATTATGGTGGAATTATGTATTATTATAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
back to top