CK934531 | Citrus Genome Database

Overview


Name	CK934531
Unique Name	CK934531
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	725

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK934531_ssr25	microsatellite	CK934531_ssr25:25..34.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.511e-47
Identity = 60/86 (69.77%), Postives = 66/86 (76.74%), Query Frame = 3

Query:  129 HANG--GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNF 380
            H NG  GGGW+NA ATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+EI+C ND KWCLPG+I+VTATNF
Sbjct:   18 HVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNF 103

HSP 2 Score: 78.9518 bits (193), Expect = 7.511e-47
Identity = 34/47 (72.34%), Postives = 36/47 (76.60%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPPQQHFDLSQPVFQ IAQYRAG+VPVAY+R
Sbjct:  103 FCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRR 149

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.329e-44
Identity = 58/80 (72.50%), Postives = 63/80 (78.75%), Query Frame = 3

Query:  141 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNF 380
            GGGWINA ATFY              YGNLYSQGYGT+TAALSTALFNNGLSCGSC+EI+C ND KWCLPG+I+VTATNF
Sbjct:   23 GGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNF 102

HSP 2 Score: 72.7886 bits (177), Expect = 4.329e-44
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP +HFDL+QPVFQ IAQYRAG+VPV+Y+R
Sbjct:  102 FCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRR 148

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.124e-41
Identity = 54/78 (69.23%), Postives = 59/78 (75.64%), Query Frame = 3

Query:  147 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNF 380
            GW+NA ATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+EIKC +D  WCLPG I+VTATNF
Sbjct:   29 GWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNF 106

HSP 2 Score: 72.4034 bits (176), Expect = 1.124e-41
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP  HFDLSQPVFQ IAQY+AGVVPV+Y+R
Sbjct:  106 FCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRR 152

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.240e-41
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = 3

Query:  147 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNF 380
            GW+NARATFY              YGNLYSQGYGTNTAALSTALFN G SCG+C++IKCV+DPKWC+ GTI VT TNF
Sbjct:   28 GWVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNF 105

HSP 2 Score: 71.2478 bits (173), Expect = 3.240e-41
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRYA 523
            FC          GGWCNPPQ HFDL+QP+F  IAQY+AGVVPV Y+R A
Sbjct:  105 FCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVA 153

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.691e-40
Identity = 56/82 (68.29%), Postives = 62/82 (75.61%), Query Frame = 3

Query:  141 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNF 380
            GG WINA ATFY              YGNLYSQGYG NTAALSTALFNNGLSCGSC+E+KC+NDP WCLPG  +I++TATNF
Sbjct:   29 GGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNF 110

HSP 2 Score: 65.0846 bits (157), Expect = 2.691e-40
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP++HFDL+ P+F  IA+Y+AG+VPV+Y+R
Sbjct:  110 FCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.103e-38
Identity = 51/79 (64.56%), Postives = 56/79 (70.89%), Query Frame = 3

Query:  144 GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNF 380
            GGW    ATFY              YGNLY QGYGTNTAALSTALFNNGL+CG+CYE+KC +DP+WCL  TI VTATNF
Sbjct:   28 GGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNF 106

HSP 2 Score: 67.0106 bits (162), Expect = 4.103e-38
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP QHFDL++P F  IAQYRAG+VPV+++R
Sbjct:  106 FCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRR 152

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.437e-37
Identity = 52/83 (62.65%), Postives = 58/83 (69.88%), Query Frame = 3

Query:  132 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNF 380
            A G GGW +A ATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C N    CLPG+I VTATNF
Sbjct:   18 AAGYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNF 100

HSP 2 Score: 68.1662 bits (165), Expect = 4.437e-37
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP+ HFD+++P F HIAQYRAG+VPV+++R
Sbjct:  100 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.437e-37
Identity = 52/83 (62.65%), Postives = 58/83 (69.88%), Query Frame = 3

Query:  132 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNF 380
            A G GGW +A ATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C N    CLPG+I VTATNF
Sbjct:   18 AAGYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNF 100

HSP 2 Score: 68.1662 bits (165), Expect = 4.437e-37
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP+ HFD+++P F HIAQYRAG+VPV+++R
Sbjct:  100 FCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.663e-36
Identity = 52/87 (59.77%), Postives = 60/87 (68.97%), Query Frame = 3

Query:  132 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDP--KWCLPG--TIMVTATNF 380
            A GGG W +A ATFY              YGNLYSQGYG N AALSTALFN+G SCG+C+EIKCVN P  +WC PG  +I++TATNF
Sbjct:   30 AYGGGEWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNF 116

HSP 2 Score: 68.9366 bits (167), Expect = 1.663e-36
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP+ HFDL+ P+F HIA+YRAG+VPV+Y+R
Sbjct:  116 FCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRR 162

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.340e-35
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 3

Query:  129 HANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNF 380
            +++  GGW    ATFY              YGNL+SQGYG  TAALSTALFN+G  CG+C+E++C +DP+WC+PG+I+V+ATNF
Sbjct:   25 NSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNF 108

HSP 2 Score: 66.6254 bits (161), Expect = 2.340e-35
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP +HFDL++P F  IAQYRAG+VPVA++R
Sbjct:  108 FCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRR 154

The following BLAST results are available for this feature:

BLAST of CK934531 vs. ExPASy Swiss-Prot

BLAST of CK934531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59


Match Name	E-value	Identity	Description
EXPA1_ARATH	7.511e-47	69.77	Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ...	[more]
EXP10_ARATH	4.329e-44	72.50	Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=...	[more]
EXP15_ARATH	1.124e-41	69.23	Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=...	[more]
EXP14_ARATH	3.240e-41	67.95	Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=...	[more]
EXPA9_ARATH	2.691e-40	68.29	Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ...	[more]
EXPA8_ARATH	4.103e-38	64.56	Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ...	[more]
EXPA4_ORYSJ	4.437e-37	62.65	Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP...	[more]
EXPA4_ORYSI	4.437e-37	62.65	Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4...	[more]
EXPA7_ORYSJ	1.663e-36	59.77	Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP...	[more]
EXPA2_ARATH	2.340e-35	52.38	Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004229_H11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_H11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934531 ID=CK934531; Name=CK934531; organism=Citrus sinensis; type=EST; length=725bp
GGGGACTCAACTGCCTCACATTTCCTCTCTCTCTTTCTCTACTCTGCTTC
TGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTT
GGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGT
GGATCAATGCTCGTGCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACT
ATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAGCCAGGGTTATGGAAC
GAACACTGCAGCCTTGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTG
GGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAATGGTGCTTGCCC
GGCACCATTATGGTCACAGCTACCAATTTTGCCCACCGAACAACGCCCTC
CCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCT
CTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCC
CTGTAGCTTACAAGAGGTATGCTCTCTTGGTTTTAAGCTCAACAAGTGGT
AATTAATGTTCGTTAACTAGAGATTAAAACCATACTCTTATATTGTCCCC
GCTTACTATTGCTCTAGTCTAGTGGCCCAATGCTTTTATTGATTGTGATT
TGTGGTCTAGCCCAAGATTTTACTTTATTTCCCACTAATTTATTCATGGT
GGTTTTTTTCCCCCAAAAAAAAAAA