CK934534

Overview
NameCK934534
Unique NameCK934534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length936
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10022 contig Csv1_Contig10022:10..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934534 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.729e-58
Identity = 105/128 (82.03%), Postives = 116/128 (90.62%), Query Frame = 2
Query:   35 LGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFATWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 418
            +GP+DRLIHVYHFTKE  QNQ Q+QNFGEPFFLVIHEGETL+EIK RIQ+KL VPDE+FA WKFA  S+GRP+YL DTD+V +RFQRRDVYGAWEQYLGLEH D+APKRAYAANQNRH YEKPVKIYN
Sbjct:  989 IGPNDRLIHVYHFTKEAGQNQ-QVQNFGEPFFLVIHEGETLEEIKTRIQKKLHVPDEDFAKWKFASFSMGRPDYLLDTDVVYNRFQRRDVYGAWEQYLGLEHIDNAPKRAYAANQNRHAYEKPVKIYN 1115          
BLAST of CK934534 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 5.563e-57
Identity = 104/128 (81.25%), Postives = 117/128 (91.41%), Query Frame = 2
Query:   35 LGPHDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFATWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQYLGLEHSDSAPKRAYAANQNRHTYEKPVKIYN 418
            +GP+DRLI VYHF KET QNQ Q+QNFGEPFFLVIHEGETL+EIK RIQ+KL V DE+FA WKFAF+S+GRPEYLQDTD+V +RFQRRDVYGA+EQYLGLEH+D+ PKRAYAANQNRH YEKPVKIYN
Sbjct:  990 IGPNDRLILVYHFAKETGQNQ-QVQNFGEPFFLVIHEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQDTDVVYNRFQRRDVYGAFEQYLGLEHADTTPKRAYAANQNRHAYEKPVKIYN 1116          
BLAST of CK934534 vs. ExPASy Swiss-Prot
Match: UBP7_RAT (Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.214e-11
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 2
Query:   44 HDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFATWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 418
            ++ LI V HF KE          FG PF L IH+GE  +E+  RIQ  L + ++EF  +KFA + +GR +Y+ + +   +        G       +LGL+H + APKR      +R+TY EK +KI+N
Sbjct:  987 NEMLITVAHFHKEV------FGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1103          
BLAST of CK934534 vs. ExPASy Swiss-Prot
Match: UBP7_MOUSE (Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.214e-11
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 2
Query:   44 HDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFATWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 418
            ++ LI V HF KE          FG PF L IH+GE  +E+  RIQ  L + ++EF  +KFA + +GR +Y+ + +   +        G       +LGL+H + APKR      +R+TY EK +KI+N
Sbjct:  987 NEMLITVAHFHKEV------FGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1103          
BLAST of CK934534 vs. ExPASy Swiss-Prot
Match: UBP7_HUMAN (Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.586e-11
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 2
Query:   44 HDRLIHVYHFTKETAQNQMQIQNFGEPFFLVIHEGETLQEIKVRIQRKLQVPDEEFATWKFAFLSLGRPEYLQDTDIVSSRFQRRDVYGAWEQ---YLGLEHSDSAPKRAYAANQNRHTY-EKPVKIYN 418
            ++ L+ V HF KE          FG PF L IH+GE  +E+  RIQ  L + ++EF  +KFA + +GR +Y+ + +   +        G       +LGL+H + APKR      +R+TY EK +KI+N
Sbjct:  986 NEMLVTVAHFHKEV------FGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKR------SRYTYLEKAIKIHN 1102          
The following BLAST results are available for this feature:
BLAST of CK934534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UBP13_ARATH1.729e-5882.03Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP12_ARATH5.563e-5781.25Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP7_RAT1.214e-1135.66Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus ... [more]
UBP7_MOUSE1.214e-1135.66Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus mus... [more]
UBP7_HUMAN1.586e-1134.88Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sa... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004258_A02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934534 ID=CK934534; Name=CK934534; organism=Citrus sinensis; type=EST; length=936bp
GGGGGCAGAAGAGATTCCAGAAGAAGAAAANNNTCTTGGTCCACATGATC
GTCTAATTCATGTTTATCACTTTACAAAAGAGACAGCTCAGAACCAGATG
CAAATTCAGAACTTCGGTGAACCGTTTTTCTTAGTTATACATGAAGGTGA
GACTCTGCAAGAAATAAAAGTGCGAATACAGAGGAAACTGCAAGTTCCAG
ATGAAGAGTTTGCTACGTGGAAGTTTGCATTCCTTTCTCTTGGTCGCCCA
GAATACCTTCAGGACACGGACATTGTTTCCAGTCGTTTTCAGAGAAGAGA
TGTTTATGGTGCTTGGGAGCAATATCTTGGATTGGAACACTCAGACAGTG
CTCCTAAAAGGGCATATGCTGCTAACCAGAATCGGCATACGTATGAGAAG
CCAGTTAAAATCTACAATTAGGAAACATTTGAAGATGCATGAATTTCATT
CATGGCTGTGGATTCAGTTGGTAAGCCTCAACACCAATTGATCTGTAAAA
ATGGGCAAAATGAAAAGGGATCGAGGCTATAAAGGTGAAAAGGGAAAGCA
TATGGTTGTTGACTTTATTGGGGTATTGTAATTCTTCTTCAGCTAGCTTG
GATTGGGAGGACATTTCCCCTTTAGCAAATGTGTATCTATCTGCAAGTGT
TGTCACAGATATATTTATAGGGTATAGTGGGTGATCCTTGTTTTCTTTTT
TTCCCCTTTTTAATTAATCCTTGTTTCTTTATTTTCCTTTTTCATCATGT
TTGCTTTCCTGATTTTTGTTTTCATGTAGATGGCTGATCAGCCACTGTTG
TGAGCCTGTTTCCACACAGAGAGATATATATACATATTTTTTTGTATACG
GAAGTTTACAGGCCCTGCATTTTTCATTTGTCATAGATAATATTAGTTGC
CTTCTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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