EY728233

Overview
NameEY728233
Unique NameEY728233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11717 contig Csv1_Contig11717:1..631. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSEFS (Co-chaperone protein hscB homolog OS=Pseudomonas fluorescens (strain SBW25) GN=hscB PE=3 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 4.812e-81
Identity = 150/173 (86.71%), Postives = 156/173 (90.17%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +GTPCHFALFELQP+FRLDLEQLATRYRELARGVHPDRFADASEREQRLALE+SASLNEAYQTLKNPPKRARYLLAM G E+P+EVTV DPDFLMQQMQWR             GVAVFKRRLK AQDELNESFAACW+DAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD
Sbjct:    1 MGTPCHFALFELQPNFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEKSASLNEAYQTLKNPPKRARYLLAMNGGEVPIEVTVHDPDFLMQQMQWREELEDLQDEADVAGVAVFKRRLKTAQDELNESFAACWNDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 173
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSEPF (Co-chaperone protein hscB homolog OS=Pseudomonas fluorescens (strain Pf0-1) GN=hscB PE=3 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.021e-75
Identity = 139/173 (80.35%), Postives = 149/173 (86.13%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +G PCHFALFELQP FRLDLEQLATRYRELARGVHPDRFADASEREQR ALEQSA LN+AYQTLK+P +RARYLL + G E+P+EVTV DP+FL+QQMQWR             GVA FKRRLK AQ+ELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD
Sbjct:    1 MGIPCHFALFELQPGFRLDLEQLATRYRELARGVHPDRFADASEREQRSALEQSARLNDAYQTLKSPAQRARYLLTISGHEVPMEVTVHDPEFLLQQMQWREELEDLQDSADLAGVAAFKRRLKTAQEELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 173
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSESM (Co-chaperone protein hscB homolog OS=Pseudomonas syringae pv. tomato GN=hscB PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.074e-72
Identity = 135/173 (78.03%), Postives = 151/173 (87.28%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +G+PCHFALFEL+P F+LDL+QLATRYRELAR VHPDRFADA EREQRLALE+SASLNEAYQTLK+PPKRARYLLAM G E+PLEVTV DP+FL+QQMQ R             GVA FKR+LKVAQDELN+SFAACW+DAAQRE AE+LMRRMQFLDKL++EVRQLEERLDD
Sbjct:    1 MGSPCHFALFELKPEFQLDLDQLATRYRELARNVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPKRARYLLAMNGNEVPLEVTVHDPEFLLQQMQLREDLEDLQDEADLAGVATFKRQLKVAQDELNQSFAACWNDAAQREHAEKLMRRMQFLDKLSHEVRQLEERLDD 173
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSEE4 (Co-chaperone protein hscB homolog OS=Pseudomonas entomophila (strain L48) GN=hscB PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 3.822e-70
Identity = 128/173 (73.99%), Postives = 148/173 (85.55%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +GTPCH+ALF+LQP+FRLDL++LA RYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+GG E+P EVTV DPDFL+QQMQWR             GV VFK+RLKVAQD LN+ FA CWDDAAQR++AERLMRRMQFLDKL  EVRQLEERLDD
Sbjct:    1 MGTPCHYALFDLQPAFRLDLDKLAVRYRELAREVHPDRFADASEREQRVALEKSAALNDAYQTLRSAPRRARYLLAIGGHEVPQEVTVHDPDFLLQQMQWREELEELQDEADLDGVGVFKKRLKVAQDTLNDDFADCWDDAAQRDKAERLMRRMQFLDKLAQEVRQLEERLDD 173
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSEMY (Co-chaperone protein hscB homolog OS=Pseudomonas mendocina (strain ymp) GN=hscB PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 6.519e-70
Identity = 132/173 (76.30%), Postives = 145/173 (83.82%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +G PCHFALF+LQPSFRLDLEQLA RYRELAR VHPDRFADA EREQRLALE+SA LNEAYQ LK P +RARYLLA+ G ELPLEVTVQDPDFL+QQMQ R             GVA FKRRLK AQ++LN+SFAACWDD  +RE+AERLMRRMQFLDKL++EVRQLEERLDD
Sbjct:    1 MGNPCHFALFDLQPSFRLDLEQLAARYRELARQVHPDRFADAGEREQRLALERSACLNEAYQVLKTPSQRARYLLALRGPELPLEVTVQDPDFLLQQMQLREELEELQDDADLAGVAAFKRRLKTAQEQLNDSFAACWDDDTRREEAERLMRRMQFLDKLSHEVRQLEERLDD 173
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSEPW (Co-chaperone protein hscB homolog OS=Pseudomonas putida (strain W619) GN=hscB PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 8.514e-70
Identity = 128/173 (73.99%), Postives = 148/173 (85.55%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +GTPCHFALF+LQP FRLDL++LATRYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+GG E+P EVTV DPDFL+QQMQWR             GVAVFK+RLK AQ++LNE FAACWD  A+R++AERLMRRMQFLDKL  EVRQLEERLDD
Sbjct:    1 MGTPCHFALFDLQPCFRLDLDKLATRYRELAREVHPDRFADASEREQRVALEKSAALNDAYQTLRSAPRRARYLLAIGGHEVPQEVTVHDPDFLLQQMQWREELEELQDEADLDGVAVFKKRLKAAQEQLNEDFAACWDVPAERDKAERLMRRMQFLDKLAQEVRQLEERLDD 173
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSEPG (Co-chaperone protein hscB homolog OS=Pseudomonas putida (strain GB-1) GN=hscB PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.229e-68
Identity = 126/173 (72.83%), Postives = 145/173 (83.82%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +GTPCH+ALF+LQPSFRLDL++LATRYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+ G E+P EVTV DPDFL+QQMQWR             GV VFK+RLK AQD LNE FAACWD   +R++AERLMRRMQFLDKL  EVRQLEERLDD
Sbjct:    1 MGTPCHYALFDLQPSFRLDLDKLATRYRELAREVHPDRFADASEREQRIALEKSAALNDAYQTLRSAPRRARYLLAISGHEVPQEVTVHDPDFLLQQMQWREELEELQDEADLDGVGVFKKRLKFAQDTLNEDFAACWDAPGERDKAERLMRRMQFLDKLAQEVRQLEERLDD 173
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSEPK (Co-chaperone protein hscB homolog OS=Pseudomonas putida (strain KT2440) GN=hscB PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.739e-68
Identity = 125/173 (72.25%), Postives = 144/173 (83.24%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +GTPCH+ALF+LQPSFRLDL++LATRYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+ G E+P EVTV DPDFL+QQMQWR             GV VFK+RLK AQD LNE FA CWD   +R++AERLMRRMQFLDKL  EVRQLEERLDD
Sbjct:    1 MGTPCHYALFDLQPSFRLDLDKLATRYRELAREVHPDRFADASEREQRIALEKSAALNDAYQTLRSAPRRARYLLAISGHEVPQEVTVHDPDFLLQQMQWREELEELQDEADLDGVGVFKKRLKAAQDTLNEDFAGCWDAPGERDKAERLMRRMQFLDKLAQEVRQLEERLDD 173
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSEP1 (Co-chaperone protein hscB homolog OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=hscB PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.577e-68
Identity = 125/173 (72.25%), Postives = 144/173 (83.24%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +GTPCH+ALF+LQPSFRLDL++LATRYRELAR VHPDRFADASEREQR+ALE+SA+LN+AYQTL++ P+RARYLLA+ G E+P EVTV DPDFL+QQMQWR             GV VFK+RLK AQD LNE FA CWD   +R++AERLMRRMQFLDKL  EVRQLEERLDD
Sbjct:    1 MGTPCHYALFDLQPSFRLDLDKLATRYRELAREVHPDRFADASEREQRVALEKSAALNDAYQTLRSAPRRARYLLAISGHEVPQEVTVHDPDFLLQQMQWREELEELQDEADLDGVGVFKKRLKAAQDTLNEDFAGCWDAPGERDKAERLMRRMQFLDKLAQEVRQLEERLDD 173
[Close]
BLAST of EY728233 vs. ExPASy Swiss-Prot
Match: HSCB_PSEAE (Co-chaperone protein hscB homolog OS=Pseudomonas aeruginosa GN=hscB PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.909e-63
Identity = 119/173 (68.79%), Postives = 135/173 (78.03%), Query Frame = 3 
Query:   18 VGTPCHFALFELQPSFRLDLEQLATRYRELARGVHPDRFADASEREQRLALEQSASLNEAYQTLKNPPKRARYLLAMGGRELPLEVTVQDPDFLMQQMQWRXXXXXXXXXXXXXGVAVFKRRLKVAQDELNESFAACWDDAAQREQAERLMRRMQFLDKLTYEVRQLEERLDD 536
            +G PCHFA F+LQP+F +DL++L  RYREL R VHPDRFADA EREQRLALE++A LNEAYQTLK+ P+RA YLL + G ELPLE TVQDP+FL+QQMQ R             GVA FKRRLK AQ EL   FAACWDDA +RE+AERL+RRMQFLDKL  EVRQLEERLDD
Sbjct:    1 MGKPCHFAQFDLQPAFLVDLDELGQRYRELVRSVHPDRFADAPEREQRLALERAAQLNEAYQTLKSAPRRALYLLTLSGHELPLEATVQDPEFLLQQMQLREELEELQDSADLAGVATFKRRLKAAQAELEREFAACWDDAQRREEAERLVRRMQFLDKLAQEVRQLEERLDD 173
The following BLAST results are available for this feature:
BLAST of EY728233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
HSCB_PSEFS4.812e-8186.71Co-chaperone protein hscB homolog OS=Pseudomonas f... [more]
HSCB_PSEPF3.021e-7580.35Co-chaperone protein hscB homolog OS=Pseudomonas f... [more]
HSCB_PSESM1.074e-7278.03Co-chaperone protein hscB homolog OS=Pseudomonas s... [more]
HSCB_PSEE43.822e-7073.99Co-chaperone protein hscB homolog OS=Pseudomonas e... [more]
HSCB_PSEMY6.519e-7076.30Co-chaperone protein hscB homolog OS=Pseudomonas m... [more]
HSCB_PSEPW8.514e-7073.99Co-chaperone protein hscB homolog OS=Pseudomonas p... [more]
HSCB_PSEPG1.229e-6872.83Co-chaperone protein hscB homolog OS=Pseudomonas p... [more]
HSCB_PSEPK2.739e-6872.25Co-chaperone protein hscB homolog OS=Pseudomonas p... [more]
HSCB_PSEP13.577e-6872.25Co-chaperone protein hscB homolog OS=Pseudomonas p... [more]
HSCB_PSEAE5.909e-6368.79Co-chaperone protein hscB homolog OS=Pseudomonas a... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-B11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728233 ID=EY728233; Name=EY728233; organism=Citrus sinensis; type=EST; length=631bp
AACATCTGAGGCTGATTGTGGGTACTCCTTGTCATTTCGCTTTATTCGAG
CTGCAGCCGAGTTTTCGACTGGACCTTGAACAGCTTGCCACGCGCTACCG
TGAACTGGCGCGTGGGGTGCATCCGGACCGCTTTGCTGACGCTTCCGAGC
GTGAGCAACGCTTGGCGCTGGAGCAATCAGCCAGCCTCAACGAAGCCTAT
CAGACGCTCAAGAACCCTCCCAAACGCGCGCGCTACCTGCTCGCCATGGG
CGGTCGCGAGCTGCCGCTTGAAGTCACGGTCCAGGACCCTGATTTCCTGA
TGCAGCAGATGCAATGGCGCGAGGAGCTCGAAGAACTGCAGGACGAGGCC
GATCTGGCCGGAGTCGCGGTCTTCAAGCGCCGTCTGAAAGTGGCCCAGGA
TGAACTCAACGAAAGCTTCGCAGCCTGTTGGGATGACGCAGCGCAACGTG
AGCAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCGACAAGCTCACC
TACGAAGTGCGCCAGTTAGAAGAGCGCCTCGACGATTAACCCAGTGCCGC
CCCAGTTGCACGCCTGATATACAGATAAGTCCTGNATACCATGGCCCTAC
TGCAGATCGCCGAACCCGGTCAAAGTCCTCA
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